PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009219001
Common NameVIT_18s0001g07900
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27732.8 Da    PI: 9.929
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009219001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-271059251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       ri+n++ rqvtfskRr g+lKKA+EL +LCdaev viifsstgkly+y+s
  GSVIVT01009219001 10 RIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVIIFSSTGKLYDYAS 59
                       8***********************************************86 PP
2K-box87.23.2e-2981170998
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        + +++ + +q+e+a L+++++ Lq+++R+++Ge+L+ Ls+k+Lq+Le+qLe sl+ +R kK+++l+++i+el +k + l++en +L kk+
  GSVIVT01009219001  81 NPTSEVKFWQREAAMLRQQLQHLQENHRQMMGEELSGLSVKDLQNLENQLEMSLRGVRMKKDQILIDEIQELNQKGNLLHNENVELYKKV 170
                        678899*********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.26E-42278No hitNo description
SuperFamilySSF554551.44E-31291IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.9E-2883170IPR002487Transcription factor, K-box
PROSITE profilePS5129716.14386176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AEVGVIIFSS TGKLYDYAST  60
SIKSITERYI KAKEEHQQLV NPTSEVKFWQ REAAMLRQQL QHLQENHRQM MGEELSGLSV  120
KDLQNLENQL EMSLRGVRMK KDQILIDEIQ ELNQKGNLLH NENVELYKKV NLIRQENMEL  180
YKKVYGTREV NGTNRNAFTN GLSIGEDLHV PIHLQLCQPQ QQNYETTPAR ATKLGRLQLQ  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21181181MEF2C
5f28_B1e-21181181MEF2C
5f28_C1e-21181181MEF2C
5f28_D1e-21181181MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.123212e-37fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981394.11e-152PREDICTED: MADS-box transcription factor 23 isoform X3
SwissprotQ6EP491e-108MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLE0CNS31e-176E0CNS3_VITVI; Uncharacterized protein
STRINGVIT_18s0001g07900.t011e-177(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-107AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]