PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01009198001 | ||||||||
Common Name | VIT_18s0001g07730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GATA | ||||||||
Protein Properties | Length: 325aa MW: 35449.6 Da PI: 4.9352 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.4 | 3.1e-16 | 163 | 199 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ GSVIVT01009198001 163 CQHCGVSEnsTPAMRRGPAGPRTLCNACGLMWANKGT 199 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.609 | 23 | 58 | IPR010399 | Tify domain |
SMART | SM00979 | 6.0E-6 | 23 | 58 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.4E-9 | 26 | 57 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.65 | 91 | 133 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.7E-15 | 91 | 132 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.629 | 157 | 205 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 8.3E-9 | 157 | 210 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.09E-11 | 158 | 207 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.7E-15 | 161 | 204 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.79E-16 | 162 | 206 | No hit | No description |
Pfam | PF00320 | 3.9E-14 | 163 | 199 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 163 | 190 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MDDVDDDPHI NSINPIDHAG VVVASRTSEL TLAFEGEVYV FPAVTPEKVQ AVLLLLGGRD 60 IPTGVPTIEV PFDQSNRGVG DLPKRSNLSR RIASLVRFRE KRKERCFDKK IRYTVRKEVA 120 QRMHRKNGQF ASLKESSGPS NWDSAQSLQG DTTPRPETVL RRCQHCGVSE NSTPAMRRGP 180 AGPRTLCNAC GLMWANKGTL RDLSKGGRNL SLDQIELGTP IDVKPSIMEG ENFSGSQDEH 240 ITPEDPSKAV AERTDNPSVN ADEEVMSSGV YPSSFTDLHE TADDLSHTLP MGIVHSSGNL 300 DDQETLVELA NASETEMDIP GQTC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.11778 | 0.0 | bud| fruit| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM470505 | 4e-76 | AM470505.2 Vitis vinifera contig VV78X077841.20, whole genome shotgun sequence. | |||
GenBank | AM488671 | 4e-76 | AM488671.2 Vitis vinifera contig VV78X090115.11, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010664424.1 | 0.0 | PREDICTED: GATA transcription factor 24 isoform X1 | ||||
Swissprot | Q8GXL7 | 4e-70 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | F6H147 | 0.0 | F6H147_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g07730.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-74 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01009198001 |
Publications ? help Back to Top | |||
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