PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009166001
Common NameLOC104882497, VIT_18s0001g07410
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 209aa    MW: 22405.1 Da    PI: 9.7096
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009166001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.5e-142269254
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       + +h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++v+++ +L
  GSVIVT01009166001 22 CNSHSEAERRRRQRINAHLSTLRTLLPNT-----TKTDKASLLAEVVRHVTEL 69
                       689*************************9.....8*************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7962069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-112269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-132477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-132472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.96E-122471No hitNo description
SMARTSM003539.9E-122675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.4E-4116179No hitNo description
SuperFamilySSF550217.32E-5117181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MKLKLEDGDS GTRVEGKSTA ACNSHSEAER RRRQRINAHL STLRTLLPNT TKTDKASLLA  60
EVVRHVTELR KRAADVAGQN GDGCCSGGGS ESWTFPGETD EVTLGYYEGD ERLIKATLCC  120
EDRPSLNRDL TQAIGSVRAR VVRAEMATVG GRTKSVVVMQ WGGGGEAELG NLRRALKAVV  180
ENRASGFGST GVFPLHKRPR FSTSNASS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4425220.0AM442522.2 Vitis vinifera contig VV78X189854.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664394.11e-151PREDICTED: transcription factor bHLH30 isoform X1
RefseqXP_010664396.11e-151PREDICTED: transcription factor bHLH30 isoform X2
RefseqXP_010664397.11e-151PREDICTED: transcription factor bHLH30 isoform X2
TrEMBLA0A438G0211e-149A0A438G021_VITVI; Transcription factor bHLH30
TrEMBLF6H1251e-149F6H125_VITVI; Uncharacterized protein
STRINGVIT_18s0001g07410.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-36bHLH family protein