PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009032001
Common NameLOC100243754, VIT_18s0001g05670
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 325aa    MW: 36103.7 Da    PI: 6.8713
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009032001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.86.9e-201461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++lv +v+++G g+W++ ++  g++R++k+c++rw +yl
  GSVIVT01009032001 14 KGPWTPEEDQKLVSYVQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                       79********************************************97 PP
2Myb_DNA-binding55.51.3e-1767112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++++eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
  GSVIVT01009032001  67 RGKFSQEEEQTILHLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-27564IPR009057Homeodomain-like
PROSITE profilePS5129419.252961IPR017930Myb domain
SuperFamilySSF466897.49E-3311108IPR009057Homeodomain-like
SMARTSM007175.6E-161363IPR001005SANT/Myb domain
PfamPF002491.1E-181461IPR001005SANT/Myb domain
CDDcd001675.45E-131661No hitNo description
PROSITE profilePS5129427.0162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2865117IPR009057Homeodomain-like
SMARTSM007173.8E-1766114IPR001005SANT/Myb domain
PfamPF002491.7E-1667112IPR001005SANT/Myb domain
CDDcd001675.91E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLVSYVQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILH LHSILGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHQPRT DDLFSSLTHL LALANLRNLM EHHSLDDHSL KIQADAIQLA KLQYLEYLLQ  180
STVSASTNSY SPNGIANMEA FSFSSSSIPP MKENPVLSSL QLENLASFSL DSDTSQPLHH  240
PSPLAHLTAP QVPFQTPLNS EMGQTSNPNS PWVLPSPSTT LPPLVTNLSM NHPGEGSSIS  300
SYGGGPSPYW SELFEDHLMH DDLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4449970.0AM444997.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X157080.2, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284142.10.0PREDICTED: transcription factor MYB39
SwissprotQ9S9Z21e-112MYB93_ARATH; Transcription factor MYB93
TrEMBLE0CRK70.0E0CRK7_VITVI; Uncharacterized protein
STRINGVIT_18s0001g05670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-107myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]