PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01008839001 | ||||||||
Common Name | LOC100255807, VIT_18s0001g02300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 264aa MW: 30130.2 Da PI: 7.9471 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.1 | 1.4e-52 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ GSVIVT01008839001 7 LPPGFRFHPTDEELVMHYLCRKCASQSIAV-PIIAEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPI 97 79*************************999.88***************7666789************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + vg+kk Lvfy g+ap+gekt+W+mheyrl GSVIVT01008839001 98 GH--PKPVGIKKALVFYAGKAPRGEKTNWIMHEYRL 131 99..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-63 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.107 | 7 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MTAELQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKFDPW QLPEMALYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGHP KPVGIKKALV FYAGKAPRGE 120 KTNWIMHEYR LADVDRSARK KNNSLRLDDW VLCRIYNKKG IVEKQHTAAR KSDCSDVGAM 180 PPPPPPSSST APTATAALDD LVYFDSSDSR EVQSEPKWKE WENPMDFSYN YMDATVDNAF 240 LSQFPNNQMS PLQDMFMYLQ KPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-83 | 3 | 164 | 11 | 174 | Stress-induced transcription factor NAC1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.10491 | 0.0 | cell culture| flower| fruit| inflorescence| leaf| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ395517 | 0.0 | FQ395517.1 Vitis vinifera clone SS0AFA15YI09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010664191.1 | 1e-176 | PREDICTED: NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-136 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | F6H0K2 | 1e-174 | F6H0K2_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g02300.t01 | 1e-175 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-136 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01008839001 |
Entrez Gene | 100255807 |