PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008655001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LFY
Protein Properties Length: 379aa    MW: 42371.5 Da    PI: 6.4334
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008655001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY638.69.3e-19513581386
            FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmks 92 
                        mdp+af+aslfkwdpr a+ app+rlle                  +l +le+lf++yGvry+t+akiaelGftvstL+dmkdeeldd+m+s
  GSVIVT01008655001   1 MDPDAFTASLFKWDPRGAV-APPNRLLE------------------ALGGLEDLFQEYGVRYYTAAKIAELGFTVSTLLDMKDEELDDMMNS 73 
                        9**************9876.56666642..................2579****************************************** PP

            FLO_LFY  93 lseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseee 184
                        l++ifr+dllvGeryGikaavraerrrl+eee  ++rr+lls+d+++a+dalsqeglseepvq+ekea gsgg g  ++e+v+a e+k++++
  GSVIVT01008655001  74 LCQIFRWDLLVGERYGIKAAVRAERRRLDEEE--SRRRHLLSADTANAIDALSQEGLSEEPVQQEKEAGGSGGVG--TWEVVVAGERKKQQR 161
                        ******************************87..99999******************************999888..9***99996554444 PP

            FLO_LFY 185 kkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGek 276
                        +kk    k++  + +   +++++d+e  +++d++gsge+g+erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGek
  GSVIVT01008655001 162 RKKG---KTRMGSAD--DNMNEDDNEGGDEDDDKGSGERGSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEK 248
                        4444...33333333..35577788888999999********************************************************** PP

            FLO_LFY 277 cPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiW 368
                        cPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplva+aarqgwdida+fnahprL+iW
  GSVIVT01008655001 249 CPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVALAARQGWDIDAIFNAHPRLAIW 340
                        ******************************************************************************************** PP

            FLO_LFY 369 YvPtkLrqLChlerskas 386
                        YvPt+LrqLCh ers+a+
  GSVIVT01008655001 341 YVPTRLRQLCHSERSNAA 358
                        ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016982.6E-2011358IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDPDAFTASL FKWDPRGAVA PPNRLLEALG GLEDLFQEYG VRYYTAAKIA ELGFTVSTLL  60
DMKDEELDDM MNSLCQIFRW DLLVGERYGI KAAVRAERRR LDEEESRRRH LLSADTANAI  120
DALSQEGLSE EPVQQEKEAG GSGGVGTWEV VVAGERKKQQ RRKKGKTRMG SADDNMNEDD  180
NEGGDEDDDK GSGERGSERQ REHPFIVTEP GEVARGKKNG LDYLFHLYEQ CRDFLIQVQN  240
IAKERGEKCP TKVTNQVFRY AKKAGASYIN KPKMRHYVHC YALHCLDEEA SNALRRAFKE  300
RGENVGAWRQ ACYKPLVALA ARQGWDIDAI FNAHPRLAIW YVPTRLRQLC HSERSNAAAA  360
AAAAASSCIS GGADHLPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1101963562162PROTEIN LEAFY
2vy2_A1e-1101963562162PROTEIN LEAFY
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In developing inflorescences, leaf primordia and very young leaves.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2222860.0EF222286.1 Vitis hybrid cultivar LEAFY-like protein gene, complete cds.
GenBankGU5911610.0GU591161.1 Vitis vinifera cultivar Xiahei LEAFY-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284664.10.0PREDICTED: floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA3F8V40.0A3F8V4_9ROSI; LEAFY-like protein
STRINGVIT_17s0000g00150.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP70181619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-107floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]