PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01008649001 | ||||||||
Common Name | VIT_17s0000g00200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 135aa MW: 15209 Da PI: 10.6501 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.7 | 1.1e-21 | 56 | 105 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + + +r++lg+f+tae+Aa a+++a+++++g GSVIVT01008649001 56 HYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEDAALAYDEAALRFKG 105 7********.**********9...3.35************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-34 | 55 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-15 | 56 | 105 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.34E-32 | 56 | 114 | No hit | No description |
SMART | SM00380 | 1.6E-37 | 56 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.645 | 56 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-23 | 56 | 114 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.9E-12 | 57 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-12 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MSAMVSALTQ VIGNTDKNPL HDLGNPSPIS HHSATTPHDQ PSQLLQDQGN QLRRRHYRGV 60 RQRPWGKWAA EIRDPNKAAR VWLGTFDTAE DAALAYDEAA LRFKGNKAKL NFPERVQGRS 120 ELGYLTNPPS RWRW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-28 | 55 | 116 | 4 | 66 | ATERF1 |
3gcc_A | 3e-28 | 55 | 116 | 4 | 66 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.29395 | 0.0 | cell culture |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}. | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM483321 | 1e-127 | AM483321.2 Vitis vinifera contig VV79X000700.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010663806.2 | 1e-89 | PREDICTED: ethylene-responsive transcription factor ERF113 | ||||
Swissprot | Q9FH54 | 6e-47 | EF114_ARATH; Ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | A0A438EZ17 | 7e-88 | A0A438EZ17_VITVI; Ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | F6GT44 | 3e-88 | F6GT44_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g00200.t01 | 5e-89 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 3e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01008649001 |
Publications ? help Back to Top | |||
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