PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008644001
Common NameVIT_17s0000g00270
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 340aa    MW: 38196.4 Da    PI: 6.2871
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008644001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.45.9e-2637131186
           trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                        rWt+qe+ +Li++++  e+r+rrg+         + +p+W++vs+++r++g++r+p+qC+++w+nl +++kkik++e++ +++++s +++ +
  GSVIVT01008644001  37 RWTRQETFVLIQGKKIAENRVRRGRrsssafgsdQVEPKWDSVSSYCRRHGVNRGPVQCRKRWSNLVGDFKKIKTWESEVREDAESFWVLRN 128
                        8*********************986666777777**********************************************999999999999 PP

           trihelix  84 qle 86 
                        +l+
  GSVIVT01008644001 129 DLR 131
                        886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.77130103IPR017877Myb-like domain
PfamPF138372.6E-1236126No hitNo description
Gene3DG3DSA:1.10.10.601.5E-437102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAPEHSDVHE NAVGVGVGVS NGIDGGDDKN KVARHPRWTR QETFVLIQGK KIAENRVRRG  60
RRSSSAFGSD QVEPKWDSVS SYCRRHGVNR GPVQCRKRWS NLVGDFKKIK TWESEVREDA  120
ESFWVLRNDL RRERKLPGFF DREVYDVLDG RAFSATAFPL ALVSAMPDGE EEEEEEEAVF  180
DSGRQAAAED GLFSDSEQLG QEEASGSLEK ETTAATESPT QTTPIPLPIS ERKFQKFYQG  240
CTSQGKQKGK QHCSDAWTGP MSEERWKRRR VSVDGCAETN MEEQLIKVLE RNSKRLNAQL  300
EAQNVNSQLD RDQRKDHANS LVAALSKLTD AIVRIADKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266270KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4584730.0AM458473.1 Vitis vinifera contig VV78X094999.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280881.10.0PREDICTED: trihelix transcription factor ASR3 isoform X1
SwissprotQ8VZ201e-98ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLD7SH740.0D7SH74_VITVI; Uncharacterized protein
STRINGVIT_17s0000g00270.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-88Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]