PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01008553001 | ||||||||
Common Name | LOC100232957, VIT_17s0000g01280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 152aa MW: 17713.1 Da PI: 10.1954 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.6 | 2.5e-33 | 71 | 129 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt+++C+vkk+v+r ++d+++v++tYeg H+h+ GSVIVT01008553001 71 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYKDCNVKKQVQRLSKDEEIVVTTYEGIHTHP 129 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-33 | 56 | 130 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-29 | 63 | 130 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.287 | 66 | 131 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-38 | 71 | 130 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-27 | 72 | 129 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MEGHQILFPG SSKSPANPFP PNMANFHAMN IYKSAGFDAS ETKEKPGKKE GQKKIRKHRF 60 AFQTRSHVDI LDDGYRWRKY GQKAVKNNKF PRSYYRCTYK DCNVKKQVQR LSKDEEIVVT 120 TYEGIHTHPV EKPTENFEHI LRQMQSYFPI S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-27 | 61 | 128 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 9e-27 | 61 | 128 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.763 | 1e-152 | bud| fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY585679 | 0.0 | AY585679.1 Vitis vinifera WRKY-type DNA binding protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001268218.1 | 1e-112 | WRKY-type DNA binding protein 1 | ||||
Swissprot | Q9FYA2 | 1e-53 | WRK75_ARATH; Probable WRKY transcription factor 75 | ||||
TrEMBL | Q5IZC7 | 1e-110 | Q5IZC7_VITVI; WRKY-type DNA binding protein 1 | ||||
STRING | VIT_17s0000g01280.t01 | 1e-111 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 1e-55 | WRKY DNA-binding protein 75 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01008553001 |
Entrez Gene | 100232957 |