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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01008482001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
NF-X1 |
Protein Properties |
Length: 648aa MW: 71062.7 Da PI: 8.038 |
Description |
NF-X1 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01008482001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-NF-X1 | 22.2 | 3e-07 | 162 | 180 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19
CG+H+C++ CH G C+pC+
GSVIVT01008482001 162 CGRHRCERMCHVGACDPCQ 180
******************6 PP
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2 | zf-NF-X1 | 19.5 | 2.1e-06 | 226 | 243 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18
CG+H C ++CH+GpC+ C
GSVIVT01008482001 226 CGNHDCDEICHPGPCGDC 243
****************99 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter |
GO:0009642 | Biological Process | response to light intensity |
GO:0009651 | Biological Process | response to salt stress |
GO:0009697 | Biological Process | salicylic acid biosynthetic process |
GO:0010188 | Biological Process | response to microbial phytotoxin |
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process |
GO:0042742 | Biological Process | defense response to bacterium |
GO:0005634 | Cellular Component | nucleus |
GO:0000166 | Molecular Function | nucleotide binding |
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding |
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 648 aa
Download sequence Send
to blast |
MVRRSAPIWS CSSCYSIFHL NCIKKWARAP TSTDFSVEKN QGVNWRCPGC QSVQLTASKE 60 IRYVCFCGKR SDPPSDLYLT PHSCGEPCGK PLNREIIGSG ESNEDFCPHV CVLQCHPGPC 120 PPCKAFAPPR LCPCRKKIIT TRCSDRKSVL TCGQRCDKLL ECGRHRCERM CHVGACDPCQ 180 VLVNASCFCK NTVEVVLCGS MAVKGELKSE DGVFSCRWIC GKKLFCGNHD CDEICHPGPC 240 GDCNLMPSRI RTCYCGKTSL QEERRSCLDP IPTCLQIFSE ASIIQKLPVP LQPVEANGRK 300 IPLGQRKLAC DDECAKQERK RVLADAFDIT PPNLDALHFG ETSVVSELLA DLFRRDPKWV 360 LSVEERCKFL VLGKTRGTTS SLRVHVFCPM LKEKRDAVRL IAERWKLSVN SAGWEPKRFI 420 VVHVTPKSKA PARVLGAKGS TPLNVLNPPV FDPLVDMDPR LVVSLLDLPR DADISALVLR 480 FGGECELVWL NDKNALAVFS DPARAATAMR RLDHGSVYHG AVVIPQNGIA PVASQGANAW 540 GGSAGGMAKE GRNQWKKAVV QESGWSESSW GGEDWSAGSV DLQASVWKGK ESPIVASVNR 600 WNVLEPELVS SSSTSSVKTE DSGKRVGNQS VPADASEVVD DWEKAYE*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}. |
Functional Description ? help
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Source |
Description |
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM472044 | 0.0 | AM472044.2 Vitis vinifera contig VV78X003471.6, whole genome shotgun sequence. |