PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008482001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-X1
Protein Properties Length: 648aa    MW: 71062.7 Da    PI: 8.038
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008482001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.23e-07162180119
           zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                        CG+H+C++ CH G C+pC+
  GSVIVT01008482001 162 CGRHRCERMCHVGACDPCQ 180
                        ******************6 PP

2zf-NF-X119.52.1e-06226243118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG+H C ++CH+GpC+ C
  GSVIVT01008482001 226 CGNHDCDEICHPGPCGDC 243
                        ****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060083.45E-684145No hitNo description
SMARTSM004380.023107125IPR000967Zinc finger, NF-X1-type
PfamPF014224.6109124IPR000967Zinc finger, NF-X1-type
CDDcd060081.53E-13152200No hitNo description
PfamPF014227.3E-6162179IPR000967Zinc finger, NF-X1-type
SMARTSM004381.1E-4162181IPR000967Zinc finger, NF-X1-type
CDDcd060082.20E-11216259No hitNo description
PfamPF014222.1E-4226243IPR000967Zinc finger, NF-X1-type
SMARTSM004385.2E-4226245IPR000967Zinc finger, NF-X1-type
PfamPF014246.7E-6358422IPR001374R3H domain
Gene3DG3DSA:3.30.70.3301.0E-4471516IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MVRRSAPIWS CSSCYSIFHL NCIKKWARAP TSTDFSVEKN QGVNWRCPGC QSVQLTASKE  60
IRYVCFCGKR SDPPSDLYLT PHSCGEPCGK PLNREIIGSG ESNEDFCPHV CVLQCHPGPC  120
PPCKAFAPPR LCPCRKKIIT TRCSDRKSVL TCGQRCDKLL ECGRHRCERM CHVGACDPCQ  180
VLVNASCFCK NTVEVVLCGS MAVKGELKSE DGVFSCRWIC GKKLFCGNHD CDEICHPGPC  240
GDCNLMPSRI RTCYCGKTSL QEERRSCLDP IPTCLQIFSE ASIIQKLPVP LQPVEANGRK  300
IPLGQRKLAC DDECAKQERK RVLADAFDIT PPNLDALHFG ETSVVSELLA DLFRRDPKWV  360
LSVEERCKFL VLGKTRGTTS SLRVHVFCPM LKEKRDAVRL IAERWKLSVN SAGWEPKRFI  420
VVHVTPKSKA PARVLGAKGS TPLNVLNPPV FDPLVDMDPR LVVSLLDLPR DADISALVLR  480
FGGECELVWL NDKNALAVFS DPARAATAMR RLDHGSVYHG AVVIPQNGIA PVASQGANAW  540
GGSAGGMAKE GRNQWKKAVV QESGWSESSW GGEDWSAGSV DLQASVWKGK ESPIVASVNR  600
WNVLEPELVS SSSTSSVKTE DSGKRVGNQS VPADASEVVD DWEKAYE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.117020.0bud| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4720440.0AM472044.2 Vitis vinifera contig VV78X003471.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019081933.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY591e-163NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1R3FUL50.0A0A1R3FUL5_9ROSI; Zinc finger, NF-X1-type
STRINGVIT_17s0000g01920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.11e-156NF-X-like 1