PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008401001
Common NameVIT_17s0000g02660, VITISV_005933
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 210aa    MW: 23307.5 Da    PI: 10.3327
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008401001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-172976148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W+++Ed++l+d+++++G g+W++ ++  g+ R++k+c++rw +yl
  GSVIVT01008401001 29 KGAWSKQEDQKLIDYIQKHGEGCWSSLPQSAGLLRCGKSCRLRWVNYL 76
                       79******************************99************97 PP
2Myb_DNA-binding53.65.3e-1782127148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  GSVIVT01008401001  82 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 127
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3832476IPR017930Myb domain
SuperFamilySSF466891.69E-2828123IPR009057Homeodomain-like
SMARTSM007178.7E-142878IPR001005SANT/Myb domain
PfamPF002491.8E-162976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-223083IPR009057Homeodomain-like
CDDcd001673.23E-113176No hitNo description
PROSITE profilePS5129425.87577131IPR017930Myb domain
SMARTSM007174.1E-1681129IPR001005SANT/Myb domain
PfamPF002491.1E-1582127IPR001005SANT/Myb domain
CDDcd001671.97E-1184127No hitNo description
Gene3DG3DSA:1.10.10.606.7E-2684131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVAMRKPAGY GEKKSTKKRV GCEKKFTNKG AWSKQEDQKL IDYIQKHGEG CWSSLPQSAG  60
LLRCGKSCRL RWVNYLKPDV KRGNFGEDEE DLIIKLHALL GNRWSLIAGR LPGRTDNEVK  120
NYWNSHLKKK LMRMGIDPNN HRLGERASGT SKSFESRDQT SNPLISAADN NAVLDSTCGS  180
ASKTTSSLPD LNLNLNVGAP SKNYPNKTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-302813126128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9037300.0GQ903730.1 Vitis vinifera cultivar Cabernet Sauvignon R2R3 MYB transcription factor C2 motif repressor (MYBC2-L2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268180.21e-145uncharacterized protein LOC100257749
SwissprotP813934e-71MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A438KA111e-147A0A438KA11_VITVI; Transcription repressor MYB6
TrEMBLA5C8M71e-147A5C8M7_VITVI; Uncharacterized protein
STRINGVIT_17s0000g02660.t011e-147(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.16e-73myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]