PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01008303001 | ||||||||
Common Name | VIT_17s0000g03560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 37063.3 Da PI: 5.87 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl GSVIVT01008303001 20 RGPWTLEEDTLLIHYIASHGEGRWNLLAKCSGLRRTGKSCRLRWLNYL 67 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.2e-16 | 73 | 116 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ GSVIVT01008303001 73 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.988 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-31 | 18 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-16 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-23 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.72E-12 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 25.494 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-15 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 73 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.42E-11 | 77 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MSTLSKSASS SSEEDAELRR GPWTLEEDTL LIHYIASHGE GRWNLLAKCS GLRRTGKSCR 60 LRWLNYLKPD VKRGNLTPQE QLLILELHSK WGNRWSKIAQ HLPGRTDNEI KNYWRTRVQK 120 QARHLKIDSN SRAFQDVIRC VWMPRLLQKI EGSSSTSSTT SQVSIIPQSL NHADSQQHSA 180 AAPPPVVAQA PVQGPLSINE TINNLEHNEK NSSSENCTSP SICSSESMNI SQISQIPDYP 240 TSPFQAMSNS DDYSTLLKGY YNVDNSNYEM ETFNLASMSA PQGDFENPVG DCPMVESNWV 300 DSDLADSLWN MDELWQFWKL QEGAPRLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 17 | 122 | 4 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00159 | DAP | Transfer from AT1G25340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM453786 | 0.0 | AM453786.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X053495.4, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002276526.3 | 0.0 | PREDICTED: transcription factor MYB108 | ||||
TrEMBL | D7SJ03 | 0.0 | D7SJ03_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g03560.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 4e-80 | myb domain protein 62 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01008303001 |