PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01008284001 | ||||||||
Common Name | LOC100245622, VIT_17s0000g03720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24644.3 Da PI: 7.9337 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.9 | 5e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C+++C+l+p++ p+ q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG++g+++++++ql GSVIVT01008284001 4 SCNGCRVLRKGCNDSCTLRPCLqwiknPDFQANATVFLAKFYGRAGLINLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSAGLLWSGSWQL 95 6******************************************************************************************* PP DUF260 88 eqlkaelallke 99 +q+++e++l ++ GSVIVT01008284001 96 CQSAVEAVLSGA 107 *****9988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.681 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCNDSCT LRPCLQWIKN PDFQANATVF LAKFYGRAGL INLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSAGLLWS GSWQLCQSAV EAVLSGAPIM QISAESAVSS 120 MSPPLKAGDI RHVSKDENSA GSSHELHKVK SRGRFKRSKA DSMSVETVEA SLVKPTRDGS 180 DVELELTLGL EPIPKVQKAC AVVREKEEMA GSEDDTCKVE LALEYSG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.15596 | 0.0 | bud| fruit| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM474624 | 1e-158 | AM474624.2 Vitis vinifera contig VV78X005056.2, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002276899.1 | 1e-159 | PREDICTED: LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 1e-82 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A438JZ91 | 1e-157 | A0A438JZ91_VITVI; LOB domain-containing protein 41 | ||||
TrEMBL | F6GTL0 | 1e-157 | F6GTL0_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g03720.t01 | 1e-158 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 5e-85 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01008284001 |
Entrez Gene | 100245622 |