PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008241001
Common NameLOC100245771, VIT_17s0000g04130
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 253aa    MW: 27515.1 Da    PI: 6.9718
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008241001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-10752345
                       SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45
                        W+ eE++ + +a++++ ++     W++Ia++++ g++  ++k ++q
  GSVIVT01008241001  7 VWSREEEKAFENAIAMHWTEdckeVWDKIASMVP-GKSVDELKQHYQ 52
                       6*********************************.***********9 PP
2Myb_DNA-binding39.31.5e-1287131347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  GSVIVT01008241001  87 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 131
                        7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.154359IPR017884SANT domain
SMARTSM007171.1E-4457IPR001005SANT/Myb domain
SuperFamilySSF466894.11E-10661IPR009057Homeodomain-like
PfamPF002492.0E-8753IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-4754IPR009057Homeodomain-like
CDDcd001671.40E-8852No hitNo description
PROSITE profilePS5129416.87380136IPR017930Myb domain
SuperFamilySSF466895.38E-1782137IPR009057Homeodomain-like
SMARTSM007172.3E-1084134IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.1E-1784134IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.9E-1185130IPR009057Homeodomain-like
PfamPF002495.6E-1187131IPR001005SANT/Myb domain
CDDcd001675.68E-1087132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSSEVPVWSR EEEKAFENAI AMHWTEDCKE VWDKIASMVP GKSVDELKQH YQFLVEDVNA  60
IEAGHIPLPN YAADEASSEQ ERRKGIPWTE EEHRLFLLGL DKFGKGDWRS ISRNFVISRT  120
PTQVASHAQK YFIRLNSMNR DRRRSSIHDI TSVNNGDVST PQAPITGQQG NGNPASAAAA  180
GVGPPLKHHR AQPSMPAGAL GMYGTPMGHP VAAPPGHMAS AVGTPVMLPP GPHAPPYVVP  240
VAYPMAPPPM HQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-138711173RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.100130.0inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aboveground tissues, with the highest level in leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3813090.0FQ381309.1 Vitis vinifera clone SS0ACG10YP16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274167.11e-180PREDICTED: transcription factor DIVARICATA
SwissprotB8A9B25e-86MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH595e-86MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLF6GTI51e-178F6GTI5_VITVI; Uncharacterized protein
STRINGVIT_17s0000g04130.t011e-179(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.14e-73MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]