PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01008139001 | ||||||||
Common Name | LOC100251943, VIT_17s0000g05000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28029.8 Da PI: 8.431 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.8 | 1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+gklye++s GSVIVT01008139001 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 100.1 | 3.2e-33 | 87 | 174 | 13 | 100 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++s++qe+ kLk ++e Lqr+qRhllGedL++L+ keL+qLe+qLe slk+iRs+K++ +l+q+ +lq+ke++l e+n+aLr+klee GSVIVT01008139001 87 LTQSSYQEYLKLKTRVEVLQRSQRHLLGEDLDPLNTKELEQLEHQLEMSLKQIRSTKTQNMLDQLADLQNKEHMLIEANNALRRKLEE 174 4799*********************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.1E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.983 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.48E-46 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.53E-33 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 16.281 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.2E-28 | 89 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFCSG 60 PSMAKTLEKY QKCSYGALEA SQPVYELTQS SYQEYLKLKT RVEVLQRSQR HLLGEDLDPL 120 NTKELEQLEH QLEMSLKQIR STKTQNMLDQ LADLQNKEHM LIEANNALRR KLEESNGKHP 180 LQQSWEAAGN SALYSRLPAQ SEGFFQPLER NSTLEMGYNA AGSNEITLAA PSQNDNGFGP 240 GWMLWI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 7e-30 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 7e-30 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 7e-30 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 7e-30 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.20584 | 0.0 | inflorescence |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002263039.1 | 0.0 | PREDICTED: MADS-box protein CMB1 isoform X2 | ||||
Swissprot | Q8LLR2 | 1e-126 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | D7SIM7 | 0.0 | D7SIM7_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g05000.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-104 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01008139001 |
Entrez Gene | 100251943 |
Publications ? help Back to Top | |||
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