PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008090001
Common NameVIT_17s0000g05400
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 307aa    MW: 34265.7 Da    PI: 6.7862
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008090001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg WT+eEd +++  v ++G+g+W++++++ g++R++k+c++rw +yl
  GSVIVT01008090001 14 RGLWTAEEDAKILAHVSKHGTGNWTAVPKKAGLRRCGKSCRLRWTNYL 61
                       788*******************************************97 PP
2Myb_DNA-binding482.8e-1569110346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        ++T++E+el+v++++  G++ W+ Ia+ ++ gRt++++k++w++
  GSVIVT01008090001  69 SFTPQEEELIVRLHATIGSR-WSIIAQQLP-GRTDNDVKNYWNT 110
                        79******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.361965IPR017930Myb domain
SuperFamilySSF466893.37E-3011108IPR009057Homeodomain-like
SMARTSM007171.3E-141363IPR001005SANT/Myb domain
PfamPF002493.5E-161461IPR001005SANT/Myb domain
CDDcd001671.45E-111761No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129418.58866116IPR017930Myb domain
SMARTSM007174.8E-1466114IPR001005SANT/Myb domain
CDDcd001672.27E-1069112No hitNo description
PfamPF002495.6E-1469110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009029anatomystamen
PO:0009032anatomypetal
PO:0007016developmental stagewhole plant flowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVRPPCCDKL NVKRGLWTAE EDAKILAHVS KHGTGNWTAV PKKAGLRRCG KSCRLRWTNY  60
LRPDLKHESF TPQEEELIVR LHATIGSRWS IIAQQLPGRT DNDVKNYWNT KLRKKLSEMG  120
IDPITHKPFS QILADYGNIG GLPKNGTRIG SLTRDLKNAL IHDNPSMNLL TQLKAIKLVT  180
EASSCIHHGN ISSLSSPSSS STCLTPKAKS LHTFSWSDFL LEDAFLSSDP QEQENMSKGN  240
LDLQSEPNAD GQRQVDPIEE MTNTVLSNGA SEASSSYDSS FLEAMLDREN DMFLEFPSLL  300
EEPFYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27141167108B-MYB
1h8a_C5e-271411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.115180.0flower| fruit| inflorescence| leaf| pedicel
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, first confined to meiocytes, tapetal and middle layer cells. At the microspore stage, mainly expressed in the tapetum and microspores. Later observed in developing pollen grains. {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
UniprotTISSUE SPECIFICITY: Inflorescences-specific (PubMed:18397379). Accumulates in anthers, especially in tapetum and meiocytes/microsporocytes and microspores during anther development (PubMed:17666023, PubMed:18397379). {ECO:0000269|PubMed:17666023, ECO:0000269|PubMed:18397379}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4851820.0AM485182.2 Vitis vinifera contig VV79X006335.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663429.10.0PREDICTED: transcription factor MYB35
SwissprotQ9LSI71e-75MYB35_ARATH; Transcription factor MYB35
TrEMBLD7SIJ00.0D7SIJ0_VITVI; Uncharacterized protein
STRINGVIT_17s0000g05400.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.19e-75MYB family protein
Publications ? help Back to Top
  1. Tsugama D, et al.
    A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis.
    Sci Rep, 2017. 7: p. 41497
    [PMID:28176806]
  2. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  3. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]