PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01007989001

Common Name

LOC100250157, VIT_17s0000g06340

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

M-type_MADS

Protein Properties

Length: 376aa MW: 42485.8 Da PI: 6.1931

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01007989001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.6	3.7e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRrngilKKA ELS+LCd+e+ +++fs+tg+ GSVIVT01007989001 9 KRLESTSNRQVTYSKRRNGILKKARELSILCDIEIILLMFSPTGR 53 689****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.946	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.5E-31	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-26	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-20	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KARELSILCD IEIILLMFSP TGRPTLFHGA 60 RSDIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNLQDFLGAS TQTIEELTNQ 120 ARLLQAQLTE VHKRLSYWSN PDKVDSTEHL RQMEDSLRES LNRIRVHKEN FGKHQLMSLE 180 CASQFQNGMH LPLIMDGVQE AQPLSWLPNN ENQHLILPEE PSYLPQRDME CSADASIPGY 240 SGYYSTGKQT EIGNSGQVDE QGQEGSALNQ LSGNSNLRLQ LSEQYLYSPF GNLNLPDEKK 300 LKPEMEMNLQ GNPVDYQVNG NFEIPAPIYD NRQHTWVSAS GPCSIAMFDE NSFSQGNVPP 360 IVHSAFPDSQ QNSLS*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MGRVKLKIKR LESTSNRQVT YSKRRNGILK KARELSILCD IEIILLMFSP TGRPTLFHGA  60
RSDIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNLQDFLGAS TQTIEELTNQ  120
ARLLQAQLTE VHKRLSYWSN PDKVDSTEHL RQMEDSLRES LNRIRVHKEN FGKHQLMSLE  180
CASQFQNGMH LPLIMDGVQE AQPLSWLPNN ENQHLILPEE PSYLPQRDME CSADASIPGY  240
SGYYSTGKQT EIGNSGQVDE QGQEGSALNQ LSGNSNLRLQ LSEQYLYSPF GNLNLPDEKK  300
LKPEMEMNLQ GNPVDYQVNG NFEIPAPIYD NRQHTWVSAS GPCSIAMFDE NSFSQGNVPP  360
IVHSAFPDSQ QNSLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	8e-17	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	8e-17	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	8e-17	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	8e-17	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_A	8e-17	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	8e-17	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	8e-17	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	8e-17	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	8e-17	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	8e-17	1	92	1	90	Myocyte-specific enhancer factor 2B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.12507	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM424542	0.0	AM424542.2 Vitis vinifera contig VV78X158137.17, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002281961.2	0.0	PREDICTED: agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	1e-119	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	D7SIA1	0.0	D7SIA1_VITVI; Agamous-like MADS-box protein 17
STRING	VIT_17s0000g06340.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5946	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-122	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	GSVIVT01007989001
Entrez Gene	100250157

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]