PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01007982001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 285aa MW: 32180.8 Da PI: 10.2287 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.1 | 5.5e-56 | 3 | 129 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL kkv ++++++ ++i +v+++++ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+ GSVIVT01007982001 3 LPPGFRFHPTDEELITHYLSKKVIDSNFSA-RAIGQVNLNNSEPWELPGKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEI 93 79**************************99.89***************99999*************************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ +++lvg+kktLvfy grapkgekt+Wvmheyrle GSVIVT01007982001 94 FR-GKSLVGMKKTLVFYAGRAPKGEKTNWVMHEYRLE 129 **.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-64 | 2 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.675 | 3 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-30 | 4 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MILPPGFRFH PTDEELITHY LSKKVIDSNF SARAIGQVNL NNSEPWELPG KAKMGEKEWY 60 FFCVRDRKYP TGLRTNRATE AGYWKATGKD KEIFRGKSLV GMKKTLVFYA GRAPKGEKTN 120 WVMHEYRLEG KFSLHNLPQT AKNEWVICRV FQKSSGGKKT HISGIGRLSS YGNELNPSVL 180 PPLMDASAAY NPRTRPATSQ SPHVPCFSNP IDIPPPKPLL LISCCHNSRN SAIPHFLPNA 240 RPAKPKGFTG EPWIKHEAEP ETREGDDQQT IRRSTRPIYF SRTC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-55 | 1 | 159 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-55 | 1 | 159 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-55 | 1 | 159 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-55 | 1 | 159 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-55 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-55 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-55 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-55 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-55 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-55 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-55 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-55 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-55 | 1 | 159 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-55 | 1 | 159 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.939 | 0.0 | fruit| inflorescence |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM449920 | 1e-154 | AM449920.2 Vitis vinifera contig VV78X086819.17, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002284825.1 | 1e-158 | PREDICTED: NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 1e-119 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A438I1J6 | 1e-157 | A0A438I1J6_VITVI; NAC domain-containing protein 100 | ||||
TrEMBL | A5B814 | 1e-157 | A5B814_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g06400.t01 | 1e-158 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-121 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01007982001 |
Publications ? help Back to Top | |||
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