PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01007981001 | ||||||||
Common Name | LOC104882307, VIT_17s0000g06410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 36751.4 Da PI: 8.4947 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ +++++G g+W+ +++ g+ R++k+c++rw +yl GSVIVT01007981001 14 RGPWTPEEDRKLLAYIQEHGHGSWRCVPENAGLQRCGKSCRLRWTNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l GSVIVT01007981001 67 RGKFSLREEQTIIQLHALLGNR-WSAIATHLP-NRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.495 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.09E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.34E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.48 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.93E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000902 | Biological Process | cell morphogenesis | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MGGSPCCDTT SLKRGPWTPE EDRKLLAYIQ EHGHGSWRCV PENAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLREEQTIIQ LHALLGNRWS AIATHLPNRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPSH AVLTSPNGDS KNAANLSHMA QWESARLEAE ARLVKDSKLR QTQHASASAP 180 APAQLLNKMA TRLTPPRRLD VLNAWENVGS KLKIGSSGSN RDIPSPTSTL SFLENVSTIS 240 RVESSEITGI LGTLGTEIDA FGTQQCDINM TWTMESTDEN ANFVHLLLSR SGDGILTNGG 300 RDGEELEDNK NYWNDIMNLM TCQPSRSPNL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269|PubMed:23709630}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM480824 | 0.0 | AM480824.2 Vitis vinifera contig VV78X130088.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010663350.1 | 0.0 | PREDICTED: transcription factor MYB34 | ||||
Swissprot | Q9LXF1 | 1e-109 | MYB16_ARATH; Transcription factor MYB16 | ||||
TrEMBL | D7SI94 | 0.0 | D7SI94_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g06410.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 1e-111 | myb domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01007981001 |
Entrez Gene | 104882307 |
Publications ? help Back to Top | |||
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