PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01007798001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 174aa MW: 20538.3 Da PI: 11.3732 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.2 | 8.2e-08 | 67 | 95 | 3 | 35 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgk 35 y+GVr++ ++Wv+e+r+p +k+ r++lg+ GSVIVT01007798001 67 YRGVRRRN-GNKWVCELREP---NKKSRIWLGT 95 9****887.9*********8...347******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.561 | 66 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-7 | 66 | 100 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 0.0091 | 66 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-12 | 66 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MDFFNQFCNS YPFSLDSHSV SSPESSSASD WQTRRTIQSD EEVLRASNRP KKRAGRRKFK 60 ETQHPMYRGV RRRNGNKWVC ELREPNKKSR IWLGTKNGQH MHWRRFWAAH ALKKEKKSGD 120 KRGNRAPNRP FFNLSSSLFV FHLRLCSTIF TANLPPSIFN PEFFFYKKSE TIF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM427691 | 1e-158 | AM427691.1 Vitis vinifera contig VV78X017548.10, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019081995.1 | 2e-64 | PREDICTED: dehydration-responsive element-binding protein 1D, partial | ||||
TrEMBL | A0A438BZA9 | 4e-57 | A0A438BZA9_VITVI; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | A5BVG9 | 4e-57 | A5BVG9_VITVI; CBF-like transcription factor | ||||
TrEMBL | F6HUI0 | 3e-57 | F6HUI0_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0025g04460.t01 | 6e-58 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 1e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01007798001 |