PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007715001
Common NameLOC100243290, VIT_17s0000g08710
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 320aa    MW: 35891.3 Da    PI: 4.9218
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007715001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.8e-102622962155
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        k +yp++e++  LA+++gL+++q+ +WF N+R ++
  GSVIVT01007715001 262 KWPYPTEEDKIALAESTGLDQKQINNWFINQRKRH 296
                        569*****************************885 PP
2ELK37.35.7e-13216237122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK+ LlrKYsgy+++Lk+EFs
  GSVIVT01007715001 216 ELKDKLLRKYSGYISTLKHEFS 237
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.7E-2278122IPR005540KNOX1
PfamPF037905.9E-2179120IPR005540KNOX1
SMARTSM012563.1E-27128179IPR005541KNOX2
PfamPF037918.3E-25132178IPR005541KNOX2
SMARTSM011888.9E-8216237IPR005539ELK domain
PROSITE profilePS5121310.772216236IPR005539ELK domain
PfamPF037897.9E-11216237IPR005539ELK domain
PROSITE profilePS5007112.519236299IPR001356Homeobox domain
SuperFamilySSF466891.54E-19238313IPR009057Homeodomain-like
SMARTSM003891.8E-13238303IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-28241300IPR009057Homeodomain-like
CDDcd000868.12E-14248300No hitNo description
PfamPF059201.7E-17256295IPR008422Homeobox KN domain
PROSITE patternPS000270274297IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDQLYGLHSP SSSDYHHPPP FPPENLISPS HYPNFNSPAP FPIFGSDQLL SASSLVVSDA  60
ASMVAEIQGG GSGEEVSSAI RAKIATHPLY PKLLHAYIEC QKVGAPPEVA YLLEEIRRGS  120
ELCRRNAVST CLGADPELDE FMETYCDILV KYKSDLARPF DEATAFLNNI ETQLNTLCNG  180
ASRSYVSDEA AGSSEEDLSG GEVEVQECLQ TTENQELKDK LLRKYSGYIS TLKHEFSKTK  240
KKGKLPKEAR QALLDWWNIH YKWPYPTEED KIALAESTGL DQKQINNWFI NQRKRHWKPS  300
ENMQFAVMDS IYGPFFMNE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.140390.0flower| fruit| inflorescence| pedicel
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}.
UniprotTISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4740510.0AM474051.2 Vitis vinifera contig VV78X023374.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282076.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-126KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLD7SHP30.0D7SHP3_VITVI; Uncharacterized protein
STRINGVIT_17s0000g08710.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-119KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]