PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007670001
Common NameVIT_17s0000g09080
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 176aa    MW: 20466.7 Da    PI: 9.5286
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007670001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  GSVIVT01007670001 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                       678*******************************************97 PP
2Myb_DNA-binding47.63.8e-1567111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg ++++E+++++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ 
  GSVIVT01007670001  67 RGMFSQQEEDIIISLHQVLGNR-WAQIAAQLP-GRTDNEIKNFWNSC 111
                        788*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-26664IPR009057Homeodomain-like
PROSITE profilePS5129424.171965IPR017930Myb domain
SuperFamilySSF466891.14E-2912108IPR009057Homeodomain-like
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
PfamPF002493.1E-151461IPR001005SANT/Myb domain
CDDcd001671.54E-101761No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2665116IPR009057Homeodomain-like
SMARTSM007175.4E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129419.23266116IPR017930Myb domain
PfamPF002495.4E-1467111IPR001005SANT/Myb domain
CDDcd001671.70E-970109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDIIIS LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLLKQG  120
MDPNTHKPLN ETEVGDGKNC TEKASLQLQH HFHCCHFPDF SYIQTRKFYP LLPFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.151131e-167bud| fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4451461e-93AM445146.2 Vitis vinifera contig VV78X028329.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278063.11e-106PREDICTED: protein ODORANT1 isoform X1
SwissprotQ8LPH66e-79MYB86_ARATH; Transcription factor MYB86
TrEMBLF6GSI21e-104F6GSI2_VITVI; Uncharacterized protein
STRINGVIT_17s0000g09080.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-81myb domain protein 86