PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007550001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARR-B
Protein Properties Length: 593aa    MW: 66421.5 Da    PI: 5.2914
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007550001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.41.8e-24170223155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  GSVIVT01007550001 170 KARVVWSIDLHQKFVDAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 223
                        68*******************.9*******************************8 PP

2Response_reg80.75e-27191271109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+p+ +++l+++l+k  y ev+++  +++al++l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + +
  GSVIVT01007550001  19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCCLARDALNMLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGV 108
                        89*********************.***************999999**********************6644.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        + Ga d+l Kp+ ++el +
  GSVIVT01007550001 109 QHGACDYLLKPVRMKELKN 127
                        ***************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.28E-3516139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.5E-4516164No hitNo description
SMARTSM004488.3E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.23218133IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-2419127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.98E-2920133No hitNo description
Gene3DG3DSA:1.10.10.605.5E-28167228IPR009057Homeodomain-like
SuperFamilySSF466896.27E-17168227IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-21170223IPR006447Myb domain, plants
PfamPF002498.3E-7172222IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MESGFCSPRT EAFPAGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCCLAR DALNMLRERK  60
DGFDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPV  120
RMKELKNIWQ HVFRKKIHEG KDLGATRKRK DMENRRHDDQ ELVDPSSSKK ARVVWSIDLH  180
QKFVDAVNQI GFDKVGPKKI LDLMNVPWLT RENVASHLQK YRLYLSRLQK ENELKTSEGM  240
KQQDFTCPAG SLGFQTSTLI HPKDAANCDL KYTGNNMLLI DMGTRICREA DKKGTVSILP  300
MDLKETSTSN FLDSQRANVS SQTILSRPFN YQSSQSNTTS QKWNEAPMEQ FKQPPKQEPE  360
PYALLEDDFS HALQSAPQHL VQVDLQCSAY SVGPGTAVPE RDKPGSVMIT PVRSQSRSNH  420
SQIVNPETSD AISNFKVGMK NQMVGLNCLN DCEPIQQKIF TVGDSSLGSQ VGCAYTESIG  480
LQDIDLLDYY NSELIDELET SYYADLGLNW DNDCDSVQNP FVDQSLFTAR AEASGVCYPG  540
AEGLLFFLLP LFLILVSAPS ASSAFCSASS MANCMHPKNI DMITYSYSYN YV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-18166228163ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133149RKKIHEGKDLGATRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.116590.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4565180.0AM456518.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X128587.3, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274673.10.0PREDICTED: two-component response regulator ORR26 isoform X1
SwissprotQ5N6V81e-134ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLF6GSF90.0F6GSF9_VITVI; Uncharacterized protein
STRINGVIT_17s0000g10100.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-116response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]