PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01007550001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ARR-B | ||||||||
Protein Properties | Length: 593aa MW: 66421.5 Da PI: 5.2914 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 77.4 | 1.8e-24 | 170 | 223 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl GSVIVT01007550001 170 KARVVWSIDLHQKFVDAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 223 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 80.7 | 5e-27 | 19 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 vl+vdD+p+ +++l+++l+k y ev+++ +++al++l+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + + GSVIVT01007550001 19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCCLARDALNMLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGV 108 89*********************.***************999999**********************6644.8******************* PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ ++el + GSVIVT01007550001 109 QHGACDYLLKPVRMKELKN 127 ***************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.28E-35 | 16 | 139 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 5.5E-45 | 16 | 164 | No hit | No description |
SMART | SM00448 | 8.3E-32 | 17 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.232 | 18 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.1E-24 | 19 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.98E-29 | 20 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-28 | 167 | 228 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.27E-17 | 168 | 227 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-21 | 170 | 223 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.3E-7 | 172 | 222 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MESGFCSPRT EAFPAGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCCLAR DALNMLRERK 60 DGFDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPV 120 RMKELKNIWQ HVFRKKIHEG KDLGATRKRK DMENRRHDDQ ELVDPSSSKK ARVVWSIDLH 180 QKFVDAVNQI GFDKVGPKKI LDLMNVPWLT RENVASHLQK YRLYLSRLQK ENELKTSEGM 240 KQQDFTCPAG SLGFQTSTLI HPKDAANCDL KYTGNNMLLI DMGTRICREA DKKGTVSILP 300 MDLKETSTSN FLDSQRANVS SQTILSRPFN YQSSQSNTTS QKWNEAPMEQ FKQPPKQEPE 360 PYALLEDDFS HALQSAPQHL VQVDLQCSAY SVGPGTAVPE RDKPGSVMIT PVRSQSRSNH 420 SQIVNPETSD AISNFKVGMK NQMVGLNCLN DCEPIQQKIF TVGDSSLGSQ VGCAYTESIG 480 LQDIDLLDYY NSELIDELET SYYADLGLNW DNDCDSVQNP FVDQSLFTAR AEASGVCYPG 540 AEGLLFFLLP LFLILVSAPS ASSAFCSASS MANCMHPKNI DMITYSYSYN YV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-18 | 166 | 228 | 1 | 63 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 149 | RKKIHEGKDLGATRKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.11659 | 0.0 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM456518 | 0.0 | AM456518.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X128587.3, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002274673.1 | 0.0 | PREDICTED: two-component response regulator ORR26 isoform X1 | ||||
Swissprot | Q5N6V8 | 1e-134 | ORR26_ORYSJ; Two-component response regulator ORR26 | ||||
TrEMBL | F6GSF9 | 0.0 | F6GSF9_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g10100.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-116 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01007550001 |
Publications ? help Back to Top | |||
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