PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007549001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARR-B
Protein Properties Length: 469aa    MW: 53052.1 Da    PI: 6.6239
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007549001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.22.1e-24158211155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r++W+ +LH++Fv++v+q+ G +kA Pk+il+lm+v+ Lt+e+v+SHLQkYR 
  GSVIVT01007549001 158 KARVVWSIDLHQKFVDVVTQI-GYDKARPKKILDLMNVPWLTRENVASHLQKYRF 211
                        68*******************.********************************6 PP
2Response_reg647.1e-2239319109
                        HHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
       Response_reg  19 ekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                        +k  y e +++  +++al +l+e++  +D+i+ D++mp+mdG++ll++++ e  +lp+i+++  ge++ + + ++ Ga d+l Kp+ +eel 
  GSVIVT01007549001   3 KKCSY-EMTTCCVARDALSMLQERKnsFDIIISDVNMPDMDGFQLLEHLEVEM-DLPVILISVDGEMNRVMKGVQSGACDYLLKPVRMEELK 92 
                        55567.778888888999999888778**********************8865.9***********************************98 PP

                        H CS
       Response_reg 109 k 109
                        +
  GSVIVT01007549001  93 N 93 
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011034.625199IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.28E-22199No hitNo description
Gene3DG3DSA:3.40.50.23004.1E-331106No hitNo description
SMARTSM004488.8E-11195IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521724.84E-261112IPR011006CheY-like superfamily
PfamPF000723.8E-18293IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23004.1E-33139156No hitNo description
SuperFamilySSF466898.78E-17155215IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-27157215IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-21158210IPR006447Myb domain, plants
PfamPF002494.4E-6160210IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MLKKCSYEMT TCCVARDALS MLQERKNSFD IIISDVNMPD MDGFQLLEHL EVEMDLPVIL  60
ISVDGEMNRV MKGVQSGACD YLLKPVRMEE LKNIWQHVLR KKIHEGKNSQ VMISRSSNEL  120
DDGQQLNGGE VSATRKRKDM ENRRHDDQKS VEPSTSKKAR VVWSIDLHQK FVDVVTQIGY  180
DKARPKKILD LMNVPWLTRE NVASHLQKYR FYLSKLRKEN KVKSSQGMMQ QDFTRPAGSF  240
GFQTSNLMHQ KHAANGNPKY TGNNMPLIDK GTRFCHEADK KATASILPVD LKETSASNFL  300
DCQRANVSSQ TILSHPFNHQ SSQSNTTTQT WNEVLMEQQF KQPPNQDPEL YVLLDDDFSH  360
ALLSAPQHLL QVDLQCSANA VGPGTSVPER DKPGSVMIIP LCSQSRKPTQ QQVFAVGDSS  420
LGSQVGCAYT ESIGLQDMDL FNYYNSEILA ELEETCYYDH LGFKWSND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-17154216163ARR10-B
5lxu_A8e-17158213156Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4343920.0AM434392.2 Vitis vinifera contig VV78X147272.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082172.10.0PREDICTED: two-component response regulator ORR26-like isoform X2
TrEMBLA5ASY30.0A5ASY3_VITVI; Uncharacterized protein
STRINGVIT_17s0000g10110.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.19e-90response regulator 11