PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01007339001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 25246.4 Da PI: 9.8418 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.7e-10 | 69 | 115 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL ++l + + +K++Ka iL A + + +L GSVIVT01007339001 69 KACREKVRRDRLNDRFLELGSILEPG---RPPKMDKAVILSDALRMMTQL 115 678**********************8...89************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.141 | 64 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-8 | 68 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.88E-7 | 68 | 120 | No hit | No description |
SMART | SM00353 | 5.5E-9 | 70 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-13 | 70 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-12 | 71 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.5.170 | 9.9E-4 | 130 | 163 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVSSILLQLS KINSCFAKQT LVLQNRLMCF LIIFLSVEFD DSPVNLDDVK ENHSRKRMRS 60 GLCSASGSKA CREKVRRDRL NDRFLELGSI LEPGRPPKMD KAVILSDALR MMTQLRSEGQ 120 KLKKSCEDLQ EKINELKAEK NELRDEKQRL KTEKENIVQQ IKALSSQAGF LPHPSAIPAP 180 FAAPGQVVGS KLMPFIGYPG VSMWQFMPPA AVDTSQDHVL RPPVA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.16295 | 0.0 | bud| inflorescence |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM462697 | 1e-148 | AM462697.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X186172.18, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010647170.1 | 1e-165 | PREDICTED: transcription factor ILR3 isoform X3 | ||||
Swissprot | Q9FH37 | 1e-80 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | F6HRV4 | 1e-138 | F6HRV4_VITVI; Uncharacterized protein | ||||
STRING | VIT_00s0532g00050.t01 | 1e-139 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP755 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 6e-83 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01007339001 |