PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007194001
Common NameLOC100243861, VIT_04s0008g00150
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 280aa    MW: 32252.8 Da    PI: 7.6617
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007194001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.53.4e-46111373128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                        pGfrFhPt+eel+++yL+k v gkk  l ++i  ++iy++ePwdLp   k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+ + +
  GSVIVT01007194001  11 PGFRFHPTEEELLDFYLRKMVLGKKQCL-SIIGFLNIYHHEPWDLPGLSKVGEREWYFFVPRDRKNGHGGRPNRTTEKGFWKATGSDRLIRC 101
                        9************************666.89***************8778899************************************998 PP

                NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            ++  gl+ktLvfykgrap+g+ktdW+m+eyrl
  GSVIVT01007194001 102 LrdPKKILGLRKTLVFYKGRAPRGSKTDWIMNEYRL 137
                        75567789**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.8599156IPR003441NAC domain
SuperFamilySSF1019411.2E-5510156IPR003441NAC domain
PfamPF023655.2E-2511137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDKTTSELGL PGFRFHPTEE ELLDFYLRKM VLGKKQCLSI IGFLNIYHHE PWDLPGLSKV  60
GEREWYFFVP RDRKNGHGGR PNRTTEKGFW KATGSDRLIR CLRDPKKILG LRKTLVFYKG  120
RAPRGSKTDW IMNEYRLPNT SSSLKEDIVL CKIYRKATSL KVMEQRAAME EESRMSHLTH  180
SYSSPPIQES FSSHDTHQNF GSAMPPHDIV LKAEEEEEVV LTEEEQENRT ACSSLGVATA  240
KENLTELQLP KLHMDWTADP LWTLLRSPLL DNSSPYPMW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-45615611168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.72160.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4344520.0AM434452.2 Vitis vinifera contig VV78X202842.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269602.20.0PREDICTED: NAC domain-containing protein 35
SwissprotQ10S652e-97NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLD7ST010.0D7ST01_VITVI; Uncharacterized protein
STRINGVIT_04s0008g00150.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-93NAC domain containing protein 36
Publications ? help Back to Top
  1. Velasco R, et al.
    A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
    PLoS ONE, 2007. 2(12): p. e1326
    [PMID:18094749]
  2. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]