PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01007165001

Common Name

LOC100853530, VIT_00s0494g00010

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

GRF

Protein Properties

Length: 558aa MW: 60377.9 Da PI: 6.2463

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01007165001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.3e-24	235	279	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e GSVIVT01007165001 235 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 279 79****************************************985 PP
2	QLQ	59.2	1.2e-20	165	201	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKy+ an+PvP++Ll +i+k GSVIVT01007165001 165 GPFTPSQWIELEHQALIYKYITANVPVPSNLLIPIRK 201 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.7E-11	165	201	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.0E-14	166	200	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.2	166	201	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.287	235	279	IPR014977	WRC domain
Pfam	PF08879	7.0E-21	236	278	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence Send to blast
MDKFVEACPR WMDFGLVGLE GLVGPEDVAP SQVAETETKQ MGLGSGLGKQ EISGSLQDDW 60 ADSKMARTDD FGASITMSLQ HGTSLLRSNS LLSDDGGAQQ HMLSFSSPKS EMSFLGKDGR 120 LVDRGAKTTA FPYYQPTPSA YNRNAGFGSG SLNTSMHGAF AGVRGPFTPS QWIELEHQAL 180 IYKYITANVP VPSNLLIPIR KSLNPFGLSG SSSTSLAHNS LSWGSFHLGF SGNTDPEPGR 240 CRRTDGKKWR CSRDAVADQK YCERHINRGR HRSRKPVEGQ TGHAVSGPTN SKVVPMPSTM 300 SASVMSSGGA SNSLAIAQNQ FKSLQPVAAN PSADTLVNRL QEPQGLSMIS PTVDLKSRDT 360 PFSISKLPIP FEESPQSEFG FVSSDSLLNP SERGSYMNSR NYTPFLDFSD QETQDQHPFR 420 QFIDDWPKDQ SNRSDIAWPE ELKSDWTQLS ISIPMSSSDF SSSSSSPTQE KLAFSPLRLS 480 RELDPNSSAL NLMTEGWDGS PQIGSSPTGV LQKATFGSLS NSSSGSSPTT ENKKIHERAS 540 HCEDMLGSTL ATSSSIPS

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence Send to blast

MDKFVEACPR WMDFGLVGLE GLVGPEDVAP SQVAETETKQ MGLGSGLGKQ EISGSLQDDW  60
ADSKMARTDD FGASITMSLQ HGTSLLRSNS LLSDDGGAQQ HMLSFSSPKS EMSFLGKDGR  120
LVDRGAKTTA FPYYQPTPSA YNRNAGFGSG SLNTSMHGAF AGVRGPFTPS QWIELEHQAL  180
IYKYITANVP VPSNLLIPIR KSLNPFGLSG SSSTSLAHNS LSWGSFHLGF SGNTDPEPGR  240
CRRTDGKKWR CSRDAVADQK YCERHINRGR HRSRKPVEGQ TGHAVSGPTN SKVVPMPSTM  300
SASVMSSGGA SNSLAIAQNQ FKSLQPVAAN PSADTLVNRL QEPQGLSMIS PTVDLKSRDT  360
PFSISKLPIP FEESPQSEFG FVSSDSLLNP SERGSYMNSR NYTPFLDFSD QETQDQHPFR  420
QFIDDWPKDQ SNRSDIAWPE ELKSDWTQLS ISIPMSSSDF SSSSSSPTQE KLAFSPLRLS  480
RELDPNSSAL NLMTEGWDGS PQIGSSPTGV LQKATFGSLS NSSSGSSPTT ENKKIHERAS  540
HCEDMLGSTL ATSSSIPS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269\|PubMed:20023165}.
Uniprot	TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269\|PubMed:12974814}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269\|PubMed:12974814, ECO:0000269\|PubMed:15326298, ECO:0000269\|PubMed:22419826, ECO:0000269\|PubMed:22751317}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165, ECO:0000269\|PubMed:22419826}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM488616	0.0	AM488616.1 Vitis vinifera contig VV78X030262.6, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003635376.1	0.0	PREDICTED: growth-regulating factor 1
Swissprot	O81001	1e-109	GRF1_ARATH; Growth-regulating factor 1
TrEMBL	F6HRI9	0.0	F6HRI9_VITVI; Uncharacterized protein
STRING	VIT_00s0494g00010.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3357	12	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-92	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	GSVIVT01007165001
Entrez Gene	100853530

Publications ? help Back to Top
Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013. 25(9): p. 3570-83 [PMID:24076976] Liu J,Rice JH,Chen N,Baum TJ,Hewezi T Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS ONE, 2014. 9(5): p. e98477 [PMID:24875638] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]