PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01007065001 | ||||||||
Common Name | VITISV_035498 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | G2-like | ||||||||
Protein Properties | Length: 258aa MW: 28427.9 Da PI: 6.8035 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.4 | 3.9e-34 | 19 | 73 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl GSVIVT01007065001 19 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 73 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.485 | 16 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.55E-18 | 18 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-32 | 18 | 74 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.5E-26 | 19 | 74 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.0E-10 | 21 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.2E-23 | 105 | 151 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDPINGGNSL NNNPSLASKQ RLRWTHELHE RFVDAVAQLG GPDRATPKGV LRVMGVQGLT 60 IYHVKSHLQK YRLAKYLPDS SSDGKKADKK ESGDMLSSLD GSSGMQITEA LKLQMEVQKR 120 LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ RLSGVITETD PATPAPTSEG PLLDKAAKET 180 APAKSLSIDE SFSSHHEPLT PDSGCHMVLT HQILESSLSS SFHQPHSVFL NRDQFDPQAG 240 ISISNEDQLE KVPSSNH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-24 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-24 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 6e-24 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-24 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-24 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-24 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-24 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-24 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-24 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-24 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-24 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-24 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.3593 | 0.0 | flower| inflorescence| leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ383717 | 0.0 | FQ383717.1 Vitis vinifera clone SS0ABG19YO09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010647085.1 | 1e-178 | PREDICTED: myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_010647087.1 | 1e-178 | PREDICTED: myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_019074066.1 | 1e-178 | PREDICTED: myb family transcription factor PHL7 isoform X1 | ||||
Swissprot | Q9SJW0 | 1e-125 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A5C966 | 1e-178 | A5C966_VITVI; Uncharacterized protein | ||||
STRING | VIT_00s0475g00040.t01 | 1e-178 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-86 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01007065001 |