PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01007064001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

G2-like

Protein Properties

Length: 181aa MW: 19747.3 Da PI: 8.2493

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01007064001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	38	92	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl GSVIVT01007064001 38 KPRLRWTADLHERFVDAVTQLGGANKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 92 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.43	35	95	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-32	35	93	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.91E-17	38	94	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-24	38	93	IPR006447	Myb domain, plants
Pfam	PF00249	5.4E-8	40	91	IPR001005	SANT/Myb domain
Pfam	PF14379	5.9E-9	136	158	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MFPGLIQVQP HESIVPQEDL RGSNHRGDPC LVLTSDPKPR LRWTADLHER FVDAVTQLGG 60 ANKATPKAIM RTMGVKGLTL FHLKSHLQKY RLGKQSGKDM GEAPKDGISA SYLSESPGTS 120 NSSPNLPTSD INEGYEVKEA LRVQMEVQSK LHLQVEVKAN SGARSQENKA SCMPSEERGE 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-20	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.26936	0.0	cell culture\| flower

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ396399	1e-152	FQ396399.1 Vitis vinifera clone SS0AFA10YA14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019074068.1	1e-112	PREDICTED: protein PHR1-LIKE 2
Swissprot	Q94A57	6e-58	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	F6HD65	1e-113	F6HD65_VITVI; Uncharacterized protein
STRING	VIT_00s0475g00030.t01	1e-114	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	3e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01007064001

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]