PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007006001
Common NameWRKY20
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 551aa    MW: 60180.5 Da    PI: 6.6294
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007006001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.8e-32194251260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk++ers+ d+kv+ei+Y+g+H+h+k
  GSVIVT01007006001 194 EDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCQVKKQLERSH-DGKVTEIIYKGRHDHPK 251
                        7****************************************.***************85 PP
2WRKY107.47e-34360418159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  GSVIVT01007006001 360 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 418
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-27186252IPR003657WRKY domain
PROSITE profilePS5081124.34188252IPR003657WRKY domain
SuperFamilySSF1182907.32E-25191252IPR003657WRKY domain
SMARTSM007742.1E-35193251IPR003657WRKY domain
PfamPF031062.3E-24194250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-38345420IPR003657WRKY domain
SuperFamilySSF1182907.19E-30352420IPR003657WRKY domain
PROSITE profilePS5081139.054355420IPR003657WRKY domain
SMARTSM007744.1E-40360419IPR003657WRKY domain
PfamPF031061.1E-26361418IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MSPAKLPISR SPCLTIPPGL SPSSLLESPV LLSNMKVEPS PTTGSLPKNQ IVLDPVGSAS  60
FSTTADGSTG NEINVGNFEF RPHNRSSLGS GLSSLGHLAS ASNLQHHEAR VEVQDRGQTQ  120
SFATSSYVKS DKAADPSVTA PNPQASMVAS SASLPIKIDY GKLQQSQGFD IGVQAALSEQ  180
KESNPSFTAE KSSEDGYNWR KYGQKHVKGS EFPRSYYKCT HPNCQVKKQL ERSHDGKVTE  240
IIYKGRHDHP KPQARRRFAV GAALSIHEET QDKFSYLTNI EHKTSHAHGQ TSYHGELDSV  300
PEVPPFTASD DEQEADEDDV DDPDSKRRRL ECGGLDVIPL HKPTREPRVV VQTVSEVDIL  360
DDGYRWRKYG QKVVKGNPNP RSYYKCTNAG CPVRKHVERA SHDPKAVITT YEGKHNHDVP  420
AARSNTHDTV GSSIYSTSMD AILRTKLEET DTISLDLGVG ISLSPDNGSN ERPQTMEADP  480
DRTQIHIVGS DCSKLIQATS SSAYYSISND SVDQREIREN QGGNFTFEAP PLNRSSNPYP  540
QSMGSLLMGP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-38194421878Probable WRKY transcription factor 4
2lex_A5e-38194421878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325329KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.115940.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7826020.0JQ782602.1 Vitis vinifera cultivar Thompson WRKY20 transcription factor (WRKY20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647039.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-153WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A438DDY60.0A0A438DDY6_VITVI; Putative WRKY transcription factor 20
STRINGVIT_00s0463g00010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-127WRKY family protein