PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01006485001
Common NameVIT_00s0375g00040
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 332aa    MW: 36744.2 Da    PI: 9.7936
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01006485001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.51.3e-53151421128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++
  GSVIVT01006485001  15 LPPGFRFHPTDEELVVHYLKRKAASVPLPV-TIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPI 105
                        79****************************.89***************8888999************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        l++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  GSVIVT01006485001 106 LTSnGSQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
                        99867888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-6511178IPR003441NAC domain
PROSITE profilePS5100562.19515177IPR003441NAC domain
PfamPF023654.0E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDSTDSSSGS HHPQLPPGFR FHPTDEELVV HYLKRKAASV PLPVTIIADV DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG SQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLIDSTSSNT KPPGADMGNK KGSLRLDDWV LCRIYKKNIS  180
QRPMERDKEE SMEALLASLP ASSMTSQQNT RAQTLRSTNF GAVLEHEEIS FEGMLTGQSI  240
QGLQSSSMSQ YWNGAGSIGP SSSGKHLHTD HTSGTSTSEM DGNSSFVSLL NQLPQSGTFH  300
QNTLLGSLAD EEKFNLRNIN RKKCLRRNKV G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-771518017168NO APICAL MERISTEM PROTEIN
1ut4_B8e-771518017168NO APICAL MERISTEM PROTEIN
1ut7_A8e-771518017168NO APICAL MERISTEM PROTEIN
1ut7_B8e-771518017168NO APICAL MERISTEM PROTEIN
3swm_A7e-771518020171NAC domain-containing protein 19
3swm_B7e-771518020171NAC domain-containing protein 19
3swm_C7e-771518020171NAC domain-containing protein 19
3swm_D7e-771518020171NAC domain-containing protein 19
3swp_A7e-771518020171NAC domain-containing protein 19
3swp_B7e-771518020171NAC domain-containing protein 19
3swp_C7e-771518020171NAC domain-containing protein 19
3swp_D7e-771518020171NAC domain-containing protein 19
4dul_A8e-771518017168NAC domain-containing protein 19
4dul_B8e-771518017168NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.224830.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}.
UniprotTISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4832650.0AM483265.2 Vitis vinifera contig VV78X184666.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003635288.10.0PREDICTED: NAC transcription factor 25
SwissprotQ8GY421e-111NAC25_ARATH; NAC transcription factor 25
TrEMBLD7U6G00.0D7U6G0_VITVI; Uncharacterized protein
STRINGVIT_00s0375g00040.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-114NAC domain containing protein 25