PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01006277001
Common NameVIT_00s0341g00070
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 240aa    MW: 25940.4 Da    PI: 7.0983
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01006277001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1874124256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g+
  GSVIVT01006277001  74 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALTIKGH 124
                        69****998.**********843...6***********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1274124IPR001471AP2/ERF domain
SMARTSM003809.4E-3774137IPR001471AP2/ERF domain
PROSITE profilePS5103223.24874131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3274132IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2274132IPR016177DNA-binding domain
PRINTSPR003678.4E-117586IPR001471AP2/ERF domain
CDDcd000182.34E-2975133No hitNo description
PRINTSPR003678.4E-1197113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEHPLSIDAE AQTTTTTTTT TTTTTSSSSS SSSSSAVKIS SDIPGRKEGK NGDKSRKRGK  60
SGTTSSVKDG RRPTYRGVRM RNWGKWVSEI REPRKKSRIW LGTFPTAEMA ARAHDVAALT  120
IKGHSAYLNF PELAQELPRP ATASPKDIRA AAAKAAAFHH PTSHEGDQAE LIGSHSPAAT  180
VTSNDSQDSS NSALTDDDDT FFDLPDLFLD VSHQFHEPHY WLGSQLAGTE AMEYSFSWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-17751311572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4244210.0AM424421.2 Vitis vinifera contig VV78X235548.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019073925.11e-175PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ72e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLD7SZ011e-174D7SZ01_VITVI; Uncharacterized protein
STRINGVIT_00s0341g00070.t011e-174(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]