PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01006275001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 480aa    MW: 54688.4 Da    PI: 7.1785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01006275001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-17301348148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT eEd +l+++++ +G ++Wkt+a + g++R++k+c++rw++yl
  GSVIVT01006275001 301 KGAWTSEEDRKLAEYIEVHGAKRWKTVAFKSGLNRCGKSCRLRWLNYL 348
                        79********************************************97 PP
2Myb_DNA-binding49.31.1e-15354399148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  GSVIVT01006275001 354 RGNISDDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 399
                        78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.899296348IPR017930Myb domain
SMARTSM007171.5E-13300350IPR001005SANT/Myb domain
SuperFamilySSF466893.67E-28300395IPR009057Homeodomain-like
PfamPF002492.2E-15301348IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-23302355IPR009057Homeodomain-like
CDDcd001673.02E-9303348No hitNo description
PROSITE profilePS5129425.703349403IPR017930Myb domain
SMARTSM007171.7E-15353401IPR001005SANT/Myb domain
PfamPF002495.3E-14354399IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-24356404IPR009057Homeodomain-like
CDDcd001675.43E-10358399No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MLNSLCKFVP SIREQMQDWE DGLCESDADG SFLHENWNKD LRLFSDGEDG GQQLFQLFIL  60
RAESELQTIS GDNLANNLQC IDSLKAQVSC LFGGHIIKPM LVTPGVRQCQ QSRDEIFKPR  120
RVGSCTLADV RYKGDWMKRP ISDDEVAWLA KLLVRLSDWL NENLGLSPGE NNHLTSTWSY  180
VEVSGDVCGP IETMKMVWCS IGSWLLMWGV AVAGLMRKYG LRVNLRMLAS KKVVMVLLLS  240
ALFSVLKRVF CFHSVSNILF NDLNNQTNNL SYYFTSHSYL QLHELVVGFS FSPPKKKVMN  300
KGAWTSEEDR KLAEYIEVHG AKRWKTVAFK SGLNRCGKSC RLRWLNYLRP NIKRGNISDD  360
EEDLILRLHK LLGNRWSLIA GRLPGRTDNE IKNYWNSHLS KKLQQKENKT ETSTAKETAP  420
QKPEDIAEGS GEEDKGSGYP DINFDVNEFF DFSAEGSCGL EWVNKFLELD EESWLAKKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2729940325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.21410.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4244210.0AM424421.2 Vitis vinifera contig VV78X235548.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010646854.20.0PREDICTED: sphingomyelin phosphodiesterase 4
TrEMBLF6H8520.0F6H852_VITVI; Uncharacterized protein
STRINGVIT_00s0341g00050.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.18e-52myb domain protein 66