PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01004851001
Common NameLOC100242842, VIT_07s0141g00100
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 331aa    MW: 36576.3 Da    PI: 6.6747
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01004851001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.5e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++lv+++++ G g+W++ ++  g++R++k+c++rw +yl
  GSVIVT01004851001 14 KGPWTPEEDQKLVKYIQKQGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                       79********************************************97 PP
2Myb_DNA-binding54.82.2e-1767112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++l
  GSVIVT01004851001  67 RGKFSREEEETILNLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.229961IPR017930Myb domain
SuperFamilySSF466891.16E-3111108IPR009057Homeodomain-like
SMARTSM007177.3E-151363IPR001005SANT/Myb domain
PfamPF002495.6E-171461IPR001005SANT/Myb domain
CDDcd001671.27E-111661No hitNo description
PROSITE profilePS5129426.6262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2765117IPR009057Homeodomain-like
SMARTSM007176.0E-1766114IPR001005SANT/Myb domain
PfamPF002496.1E-1667112IPR001005SANT/Myb domain
CDDcd001671.05E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRSPCCDES GLKKGPWTPE EDQKLVKYIQ KQGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SREEEETILN LHSILGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DMFASLPHLI ALVNLKELME HQSWEEHAVR LQAEAAQMAR LQCLQYLLQS  180
PASVATASNS ISGITDMEAF NLLSSLSSIK DTQVLNSSQL ETLTPSSFGA GLDSMPFSHL  240
PSLETLSTFE TPSSKDMAQS SNFTVFSQGE TLLNSPWLPS SSSSHAALPA TETSITNPAD  300
ASSSPSYEGA PPSFWPDGVF IEDPIFREIA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-29121162105C-Myb DNA-Binding Domain
1msf_C1e-29121162105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4421630.0AM442163.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X189718.9, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019073071.10.0PREDICTED: myb-related protein Myb4-like
RefseqXP_019073072.10.0PREDICTED: myb-related protein Myb4-like
RefseqXP_019073073.10.0PREDICTED: myb-related protein Myb4-like
RefseqXP_019073074.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9S9Z21e-109MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A438KR850.0A0A438KR85_VITVI; Transcription factor MYB16
TrEMBLD7TYQ50.0D7TYQ5_VITVI; Uncharacterized protein
STRINGVIT_07s0141g00100.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-108myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]