PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01004811001 | ||||||||
Common Name | VIT_10s0116g00190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | TALE | ||||||||
Protein Properties | Length: 250aa MW: 28531.3 Da PI: 6.4011 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.4 | 1.4e-09 | 176 | 210 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ GSVIVT01004811001 176 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 210 569*****************************885 PP | |||||||
2 | ELK | 41.5 | 2.8e-14 | 130 | 151 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyL+sLkqEF+ GSVIVT01004811001 130 ELKGQLLRKYSGYLSSLKQEFM 151 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03790 | 4.4E-17 | 1 | 34 | IPR005540 | KNOX1 |
SMART | SM01255 | 1.3E-11 | 1 | 38 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.4E-26 | 43 | 94 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.5E-21 | 46 | 93 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.226 | 130 | 150 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.4E-11 | 130 | 151 | IPR005539 | ELK domain |
SMART | SM01188 | 3.1E-8 | 130 | 151 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.989 | 150 | 213 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.4E-13 | 152 | 217 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-20 | 152 | 228 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 155 | 215 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.96E-12 | 162 | 214 | No hit | No description |
Pfam | PF05920 | 3.8E-17 | 170 | 209 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 188 | 211 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MAHPHYHRLL AAYANCQKVG APPEVVARLE EACASEAAMV RTGTSCIGED PALDQFMEAY 60 CEMLTKYEQE LSKPFKEAML FLSRVECQFK ALTVSSSDSA GGEGLDRNGS SEEEVDVNNN 120 FIDPQAEDRE LKGQLLRKYS GYLSSLKQEF MKKRKKGKLP KEARQQLLDW WSRHYKWPYP 180 SESQKLALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFV VMDATHPGHY YMDNVLGNPF 240 PMDLSPTLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 154 | LKQEFMKKRK |
2 | 151 | 155 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.8600 | 1e-165 | inflorescence| pedicel| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002271944.1 | 0.0 | PREDICTED: homeobox protein SBH1 | ||||
Refseq | XP_010645351.1 | 0.0 | PREDICTED: homeobox protein SBH1 | ||||
Swissprot | P46608 | 1e-150 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | F6HRE4 | 0.0 | F6HRE4_VITVI; Uncharacterized protein | ||||
STRING | VIT_10s0116g00190.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-142 | KNOX/ELK homeobox transcription factor |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01004811001 |
Publications ? help Back to Top | |||
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