PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01004811001
Common NameVIT_10s0116g00190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 250aa    MW: 28531.3 Da    PI: 6.4011
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01004811001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-091762102155
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        k +yps++++  LA+++gL+++q+ +WF N+R ++
  GSVIVT01004811001 176 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 210
                        569*****************************885 PP

2ELK41.52.8e-14130151122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK qLlrKYsgyL+sLkqEF+
  GSVIVT01004811001 130 ELKGQLLRKYSGYLSSLKQEFM 151
                        9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037904.4E-17134IPR005540KNOX1
SMARTSM012551.3E-11138IPR005540KNOX1
SMARTSM012561.4E-264394IPR005541KNOX2
PfamPF037913.5E-214693IPR005541KNOX2
PROSITE profilePS5121311.226130150IPR005539ELK domain
PfamPF037894.4E-11130151IPR005539ELK domain
SMARTSM011883.1E-8130151IPR005539ELK domain
PROSITE profilePS5007112.989150213IPR001356Homeobox domain
SMARTSM003897.4E-13152217IPR001356Homeobox domain
SuperFamilySSF466895.56E-20152228IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28155215IPR009057Homeodomain-like
CDDcd000862.96E-12162214No hitNo description
PfamPF059203.8E-17170209IPR008422Homeobox KN domain
PROSITE patternPS000270188211IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAHPHYHRLL AAYANCQKVG APPEVVARLE EACASEAAMV RTGTSCIGED PALDQFMEAY  60
CEMLTKYEQE LSKPFKEAML FLSRVECQFK ALTVSSSDSA GGEGLDRNGS SEEEVDVNNN  120
FIDPQAEDRE LKGQLLRKYS GYLSSLKQEF MKKRKKGKLP KEARQQLLDW WSRHYKWPYP  180
SESQKLALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFV VMDATHPGHY YMDNVLGNPF  240
PMDLSPTLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145154LKQEFMKKRK
2151155KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.86001e-165inflorescence| pedicel| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
UniprotTISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271944.10.0PREDICTED: homeobox protein SBH1
RefseqXP_010645351.10.0PREDICTED: homeobox protein SBH1
SwissprotP466081e-150HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLF6HRE40.0F6HRE4_VITVI; Uncharacterized protein
STRINGVIT_10s0116g00190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-142KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]