PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01004409001
Common NameVIT_00s1314g00010
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 335aa    MW: 37421.1 Da    PI: 8.3656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01004409001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-12158203555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h  +Er+RR+++ ++f  L  l+P +     +K +K+++L +Av+Y+k+Lq
  GSVIVT01004409001 158 HVVAERKRREKLTQRFIALSALVPGL-----RKTDKVSVLGEAVKYLKQLQ 203
                        8899*********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.881153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15157214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9158203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-16158218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.73E-12158207No hitNo description
SMARTSM003531.4E-14159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MPPFDNSLDG FNFDSFSSES NSSYPSFSPE TTPNFCGSTI EYFQAAGVVG RPSKQLKTNS  60
WDSCTAEPIT SRKSSSSSVQ LISFGNSNLP PPTDTLKFHG HQDKKAKPKN EASSDRNMKF  120
ASLISEGSYE NQNYSPKSGD RTKRVSSTTR NPLNNHDHVV AERKRREKLT QRFIALSALV  180
PGLRKTDKVS VLGEAVKYLK QLQERVKMLE VQTATKTMES VVSVKKSQLC DNDHSSSDQN  240
SDSCSNQTLL EIEARVFNKD VLIRIHCERQ KGFTVKILDE IEKLHLTVVN SSSLPFGNYI  300
MVITVVAQME DEFCMTVEDL VRNLRLAFST LHMN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166ERKRRE
2162167RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4782040.0AM478204.2 Vitis vinifera contig VV78X159768.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002262764.10.0PREDICTED: transcription factor bHLH18
RefseqXP_010647474.10.0PREDICTED: transcription factor bHLH18
RefseqXP_019074243.10.0PREDICTED: transcription factor bHLH18
TrEMBLD7U6Z40.0D7U6Z4_VITVI; Uncharacterized protein
STRINGVIT_00s1314g00010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-54bHLH family protein