PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003966001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 406aa    MW: 46263.4 Da    PI: 9.7427
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003966001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-121461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd +l   +   G  +W+ +++  g+ R++k+c++rw +yl
  GSVIVT01003966001 14 RGPWTIEEDHKLMSFILNNGIQCWRMVPKLAGLLRCGKSCRLRWINYL 61
                       89******************************99************97 PP
2Myb_DNA-binding50.54.7e-1667110146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ ++ E+ ++++++ +lG++ W++Ia++++ gRt++++k++w++
  GSVIVT01003966001  67 RGALSEVEENQIIQLHSRLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                        788899****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-20564IPR009057Homeodomain-like
PROSITE profilePS5129414.42961IPR017930Myb domain
SuperFamilySSF466894.87E-2711108IPR009057Homeodomain-like
SMARTSM007172.3E-51363IPR001005SANT/Myb domain
PfamPF002492.4E-101461IPR001005SANT/Myb domain
CDDcd001674.29E-41661No hitNo description
PROSITE profilePS5129425.16462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-2465117IPR009057Homeodomain-like
SMARTSM007172.7E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1467110IPR001005SANT/Myb domain
CDDcd001675.01E-1171110No hitNo description
PfamPF061555.2E-20298375IPR010376Domain of unknown function DUF971
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMSFIL NNGIQCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAL SEVEENQIIQ LHSRLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKQLG  120
LDPVTHKPIE EKDEVNEKND TVPDSASSKQ QEERNGERGD TLDTVQEKQT GGEMTSHEAS  180
TDDLLNEMLD GSSDLELGLL MNQQTKTSSN TYSPSFSLED SLNPSMAESS SLQDDCLQQW  240
VDCTVSRQEW GSDRVTGLAR HPSRRVTNRR EAMLARLRGV RSIHTTPRLT KFSLHPPKTV  300
EVKFDNGSAF NLSAEFLRIH SPAADSKVRS IGGEKVIFGR RHVGIMSAEP VGNYGVRILF  360
DDLHKTGIYT WDYFYHLGSN KFTLMRNYIK TLKKHGLNRD PPRRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. Strongest expression in the stem. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4341510.0AM434151.2 Vitis vinifera contig VV79X009259.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019080323.10.0PREDICTED: myb-related protein 315-like
SwissprotP813942e-78MYB15_ANTMA; Myb-related protein 315
TrEMBLF6GX581e-179F6GX58_VITVI; Uncharacterized protein
STRINGVIT_14s0219g00050.t011e-180(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-81myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]