PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01003836001 | ||||||||
Common Name | LOC100257602, VIT_04s0210g00170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | SBP | ||||||||
Protein Properties | Length: 208aa MW: 24335.6 Da PI: 6.3218 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 124 | 6.2e-39 | 84 | 161 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+++C +dl ak+yhrrhkvCe h+ka+ v++ g+eqrfCqqCsrfhe+s+fD++krsCr+rLa+hn+rrrk+q+ GSVIVT01003836001 84 CCQADDCGVDLRAAKRYHRRHKVCERHAKAAFVFLGGIEQRFCQQCSRFHEISQFDDTKRSCRKRLAGHNQRRRKNQP 161 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-30 | 79 | 146 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.667 | 82 | 159 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-36 | 83 | 163 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.7E-31 | 85 | 158 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MAKRSLEIKR EYERQEEYET EDEVGESEND DETVDYGGGG DGVEEEEEEE EQEEREEEVE 60 DRRKRALIRI VSGQRRGVPS NTLCCQADDC GVDLRAAKRY HRRHKVCERH AKAAFVFLGG 120 IEQRFCQQCS RFHEISQFDD TKRSCRKRLA GHNQRRRKNQ PDPPHTEDRR KPPNSKMNAS 180 SLKATEHSDD NELSFRGQSN IRHFRIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-32 | 85 | 158 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM461315 | 0.0 | AM461315.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X275163.4, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010649307.1 | 1e-150 | PREDICTED: squamosa promoter-binding-like protein 3 isoform X1 | ||||
TrEMBL | D7U6P1 | 1e-149 | D7U6P1_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0210g00170.t01 | 1e-149 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 3e-37 | squamosa promoter-binding protein-like 12 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01003836001 |
Entrez Gene | 100257602 |