PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003721001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARR-B
Protein Properties Length: 656aa    MW: 72691.1 Da    PI: 6.5594
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003721001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like924.9e-29175228155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  GSVIVT01003721001 175 KPRVVWSVELHRKFVAAVNQL-GIEKAVPKRILDLMNVEGLTRENVASHLQKYRL 228
                        79*******************.********************************8 PP
2Response_reg78.81.9e-26261341109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+p+ ++ll  +l++ +y +v+++ ++  al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i++++h++++++ + +
  GSVIVT01003721001  26 VLAVDDDPTCLMLLDGLLRRCQY-QVTTTNQAITALKMLRENKnnFDLVISDVSMPDMDGFKLLELVGL-EMDLPVIMLSSHSDPKLVMRGI 115
                        799********************.***************888888*******************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+ +eel +
  GSVIVT01003721001 116 THGACDYLLKPVRIEELKN 134
                        ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23006.8E-4223159No hitNo description
SuperFamilySSF521722.7E-3523148IPR011006CheY-like superfamily
SMARTSM004485.9E-3224136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.72725140IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.2E-2426134IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.51E-2727140No hitNo description
Gene3DG3DSA:1.10.10.602.0E-30172233IPR009057Homeodomain-like
PROSITE profilePS5129412.139172231IPR017930Myb domain
SuperFamilySSF466891.47E-19173232IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-24175228IPR006447Myb domain, plants
PfamPF002491.3E-6177227IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MTVEERKGGL AGEDGVKDPF PVGMRVLAVD DDPTCLMLLD GLLRRCQYQV TTTNQAITAL  60
KMLRENKNNF DLVISDVSMP DMDGFKLLEL VGLEMDLPVI MLSSHSDPKL VMRGITHGAC  120
DYLLKPVRIE ELKNIWQHVI RRKKIDSKDQ NKSADQDNAL HADGEENEDP SSQKKPRVVW  180
SVELHRKFVA AVNQLGIEKA VPKRILDLMN VEGLTRENVA SHLQKYRLYL KRISCVATQQ  240
ANMVAAFGAK DSSYMRMGSL DGFGHAQNSS NSVNTHGKLQ PVVLPTNQSA SLFQGIPTSL  300
ELDQLQQRKC ISTQRGEFSS VDNTTVFTTA NGFPDSRMTV HSSSNSLSNA PSNPLMLQSN  360
PQQTLCRGGL ANQSSLKAVT LNPEPYTMGV SGSSNFLDHG RCNENWQSAL QLSKFPSNSL  420
PLSEPLNCDP LTTNNLREHI SSTGSHIRRS PIDFSATSVL AGPLEDSRGE MPCQSGLIGN  480
VVQNINYAPK QRWEEQKQDY TQSSNHVFGT LNSIIPANNV MGPLNHSLDQ NNAACNRKMD  540
MPLISQSNAS SSSLVQHSEV EKSAMDTKMV SNEDYLLEQT KSQDGLIHNS YESLDDLMSA  600
MIKREHDETM LMNGEFGFDA YSLGPLTKLD LSIYSTNMKK NRKQSILRRK DIQEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-25171234164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.188900.0cell culture| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4236070.0AM423607.2 Vitis vinifera contig VV78X139868.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270833.20.0PREDICTED: two-component response regulator ARR12
RefseqXP_010656582.10.0PREDICTED: two-component response regulator ARR12
TrEMBLF6GZ310.0F6GZ31_VITVI; Two-component response regulator
STRINGVIT_11s0206g00060.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-114response regulator 12