PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003683001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 380aa    MW: 42354.7 Da    PI: 9.2936
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003683001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.54.8e-20112201186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +Wt++e+ aLi+a+re++ +lrrg+l++++W++vs+++    +    +++++qC++k+e+l++ry+++k++      +  s++++f +++
  GSVIVT01003683001 112 CWTHDETVALIDAYREKWYSLRRGNLRAADWDAVSAAVslrcHLAAPSKTSVQCRHKIEKLRQRYRAEKQRCVAYPGGFCSSWVFFANMD 201
                        8*************************************98655555699**********************99998999999****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-20111203No hitNo description
PROSITE profilePS500906.202113173IPR017877Myb-like domain
SMARTSM005950.002120208IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MFHLHGLLPI FGLPLLLATF LVILGFAPPA CHDTTPPTHP PSSNPLFFTP SSTPTSTHHA  60
NHLHLHLHFH LHLHLFLSLS STTTTTTLLS CASLFYVPNP MSAPARKFPA PCWTHDETVA  120
LIDAYREKWY SLRRGNLRAA DWDAVSAAVS LRCHLAAPSK TSVQCRHKIE KLRQRYRAEK  180
QRCVAYPGGF CSSWVFFANM DSMEHGSNQS QTSDDPNPNF DFDGNKFHLK SSPNPGFDQE  240
EGCGLKSVGD GSLVPPGPRA NNCGKINGNS NPKLDSRVLN GRSGSLRLGF GKESGVRGIK  300
RETDPISEMV SSIRLLGEGF VKMEKMKMDM AREIEKMRME MEMKRSEMLL ESQQQIVDTF  360
MKGFLEKKKK KAKMVPSEF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.109480.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4532880.0AM453288.2 Vitis vinifera contig VV79X002487.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269458.11e-125PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A438ESW41e-167A0A438ESW4_VITVI; Trihelix transcription factor ASIL2
STRINGVIT_00s0204g00020.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-36Trihelix family protein