PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003437001
Common NameLOC100260285, VIT_07s0191g00240
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 306aa    MW: 34371.8 Da    PI: 8.0206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003437001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.8e-13108159155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++++k+L+
  GSVIVT01003437001 108 QRMTHIAVERNRRRQMNEHLAVLRSLMPAS---YVQRGDQASIIGGAINFVKELE 159
                        79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.72E-13106163No hitNo description
Gene3DG3DSA:4.10.280.101.8E-13106162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.224107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-17107177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEKEPKAYDC TESLLVSFDK VYTQTQTQTL DANVDHQQAL HGNWESSCSS MVQHLKEWDA  60
NSSSTEACTG DGLLAGVTPQ PQEPAATSGR RKRRRTRSVK NKEQVENQRM THIAVERNRR  120
RQMNEHLAVL RSLMPASYVQ RGDQASIIGG AINFVKELEQ LLQPLEAQKL MKQRSQTDSS  180
TVFSNFFTFP QYSTYSTHYN SSAATKESMA EKRSAIADVE VTMVETHANI RVLSRTRPKQ  240
LFKMVAWLHS VRLTILHLNV TTVDHMVLYS FSAKVEDDCV LSSVNEIATA VYETVGRIQG  300
EAPLT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19094RKRRR
29095RKRRRT
3108119RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4678970.0AM467897.2 Vitis vinifera contig VV78X078136.20, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652690.10.0PREDICTED: transcription factor bHLH94
SwissprotQ9C7T48e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A438KPL10.0A0A438KPL1_VITVI; Transcription factor bHLH96
TrEMBLF6HRQ00.0F6HRQ0_VITVI; Uncharacterized protein
STRINGVIT_07s0191g00240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]