PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01002668001 | ||||||||
Common Name | VIT_00s0824g00020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | bHLH | ||||||||
Protein Properties | Length: 178aa MW: 20204.4 Da PI: 9.9536 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.5e-13 | 7 | 53 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK +Ka++L A++Y+k+Lq GSVIVT01002668001 7 DHVIAERKRREKLTQRFIALSAIVPGL-----KKTDKASVLGDAIKYLKQLQ 53 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.913 | 3 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-10 | 7 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-17 | 7 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-16 | 8 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.29E-11 | 8 | 57 | No hit | No description |
SMART | SM00353 | 1.8E-14 | 9 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
NPLNNQDHVI AERKRREKLT QRFIALSAIV PGLKKTDKAS VLGDAIKYLK QLQERVKTLE 60 EQTTKKTVES VVSVKKSKLS DNDQNPDSFS DQPLPEIEAR VSNKDVLIRI HCVKQKGFAV 120 RILGEIEKLR LRVVNSSVLP FGDYIMDITV VAQMEDEFCT TAKDLVRNLR LAFQHFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-15 | 2 | 56 | 6 | 57 | Transcription factor MYC2 |
5gnj_B | 5e-15 | 2 | 56 | 6 | 57 | Transcription factor MYC2 |
5gnj_E | 5e-15 | 2 | 56 | 6 | 57 | Transcription factor MYC2 |
5gnj_F | 5e-15 | 2 | 56 | 6 | 57 | Transcription factor MYC2 |
5gnj_G | 5e-15 | 2 | 56 | 6 | 57 | Transcription factor MYC2 |
5gnj_I | 5e-15 | 2 | 56 | 6 | 57 | Transcription factor MYC2 |
5gnj_M | 5e-15 | 2 | 56 | 6 | 57 | Transcription factor MYC2 |
5gnj_N | 5e-15 | 2 | 56 | 6 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 16 | ERKRRE |
2 | 12 | 17 | RKRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.30232 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM464673 | 0.0 | AM464673.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X054508.12, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002263046.4 | 1e-127 | PREDICTED: transcription factor bHLH25, partial | ||||
Swissprot | Q9T072 | 2e-62 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | F6H8A5 | 1e-121 | F6H8A5_VITVI; Uncharacterized protein (Fragment) | ||||
STRING | VIT_00s0824g00020.t01 | 1e-122 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP656 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 8e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01002668001 |