PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01002195001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 290aa    MW: 31726.4 Da    PI: 8.6438
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01002195001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-1891141256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g+
  GSVIVT01002195001  91 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALTIKGH 141
                        69****998.**********843...6***********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.24891148IPR001471AP2/ERF domain
PfamPF008471.5E-1291141IPR001471AP2/ERF domain
SMARTSM003809.4E-3791154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-3291149IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2291149IPR016177DNA-binding domain
CDDcd000184.22E-3192150No hitNo description
PRINTSPR003671.1E-1092103IPR001471AP2/ERF domain
PRINTSPR003671.1E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKKCFNHSCG LPLPSPFLSS LLSPPMEQPL SVDAEAQTTT TTTSSSSSSS SSAVKISSDI  60
PGRKEGKNGD KSRKRGKSGS TNSVKDGRRP TYRGVRMRNW GKWVSEIREP RKKSRIWLGT  120
FPTAEMAARA HDVAALTIKG HSAYLNFPEL AQELPRPATA SPKDIRAAAA KAAAFHHPTS  180
HEGDQAELIG SHSPAATVTS NDSQDSSNSA LTDDDDTFFD LPDLFLDVSH QFHEPHYWLG  240
SQLAGTEAME YSFSWANSIM EHIYIYIYKK LSLGSNQQKG WSVVVHIYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16921481572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3837370.0FQ383737.1 Vitis vinifera clone SS0ABG18YL19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003635442.11e-169PREDICTED: ethylene-responsive transcription factor ERF039
TrEMBLA0A438K3731e-168A0A438K373_VITVI; Ethylene-responsive transcription factor ERF034
TrEMBLF6HJT51e-168F6HJT5_VITVI; C-repeat factor 3 (Fragment)
STRINGVIT_00s0632g00010.t011e-169(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-44ERF family protein