PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01001896001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family FAR1
Protein Properties Length: 306aa    MW: 35266.3 Da    PI: 7.9657
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01001896001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR194.99.4e-3079166290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka+++vkkek+gkw+vt++++eHnH+l+
  GSVIVT01001896001  79 FYDTYATHLGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAITREGCKAMIVVKKEKTGKWVVTRFVKEHNHQLV 166
                        9*******************************************99.9***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.8E-2879166IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVALNLMHTI DFLEFGSFNS SRFWDLDLSN QMDEHLSDGE DGEMIESSNG KELVAHEGNS  60
EMEPHVGMEF ESEEAAKVFY DTYATHLGFI MRVDAFRRSM RDGKVVWRRL VCNKEGFRKL  120
RPRRSENRKP RAITREGCKA MIVVKKEKTG KWVVTRFVKE HNHQLVATPA NSRRTVLLSQ  180
TPDEKDIKIR ELTAELQRER KRCAAFQEQL DMVLRDMEEH SNHLSRNIDG IVQSVREIES  240
KKIVHSQSKY IGTLDHVALC DWITLEKGTR SFQVATERLG CQLQTSERIR VRENGILSMV  300
LLGMG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4587860.0AM458786.2 Vitis vinifera contig VV78X114351.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010646071.11e-160PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_010646680.11e-160PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLF6I1W90.0F6I1W9_VITVI; Uncharacterized protein
STRINGVIT_00s0174g00120.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3376727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-97FAR1 family protein