PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01001376001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 353aa    MW: 39938.9 Da    PI: 8.6305
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01001376001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.87.9e-31218272155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r+rWt++LH+rFve v+ LGG+ekAtPk il+lm+ +gLt+ hvkSHLQkYR+
  GSVIVT01001376001 218 KTRIRWTQDLHKRFVESVNCLGGAEKATPKGILKLMGSEGLTIFHVKSHLQKYRI 272
                        68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.4E-16216273IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28216275IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-23218272IPR006447Myb domain, plants
PfamPF002492.0E-6222271IPR001005SANT/Myb domain
PfamPF143794.9E-19303346IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAHPKLEAFF HCREKTPPAP VRVHIHSELF TFFTKIDVVQ NQNTGSFNCY SGKGIFSRQP  60
WKMGFCFQPD QLPASEGGST QQIINLGSTP TTIAGHFGCP AASAFYATEF YMGFPECDSY  120
PADSVTSSYP SSKFDPAGSQ SKDTQNLPSC ENQNSTRTPY RNSQVCDILF IKSDVEDAQP  180
YRILRENQNQ RIEPSSRFQL RRQPANPSHN TTSFASNKTR IRWTQDLHKR FVESVNCLGG  240
AEKATPKGIL KLMGSEGLTI FHVKSHLQKY RIARHQPGST EENSEKRTCA DVITKFDPET  300
GLRIAEGLRL QLEVQRHLHE QLEIQRNLQL QIEEQGKQLK KMLDSNRDQI RP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-23218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-23218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-23218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-23218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-23218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-23218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-23218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-23218276260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4313180.0AM431318.2 Vitis vinifera contig VV78X241236.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268475.20.0PREDICTED: myb family transcription factor PHL5 isoform X2
TrEMBLA0A438IA600.0A0A438IA60_VITVI; Myb family transcription factor PHL5
TrEMBLF6HPU10.0F6HPU1_VITVI; Uncharacterized protein
STRINGVIT_13s0156g00390.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-60G2-like family protein