PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01001374001
Common NameLOC100252814, VIT_13s0156g00370
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 341aa    MW: 38097.8 Da    PI: 8.943
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01001374001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.43.7e-29206260155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k r+rWt++LH+rFve v++LGG+ kAtPk il+lm+ +gLt+ ++kSHLQkYR+
  GSVIVT01001374001 206 KSRIRWTHDLHKRFVESVNRLGGAAKATPKGILRLMGSEGLTIFQIKSHLQKYRI 260
                        68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-27203261IPR009057Homeodomain-like
SuperFamilySSF466895.38E-16204260IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23206260IPR006447Myb domain, plants
PfamPF002491.8E-7210259IPR001005SANT/Myb domain
PfamPF143793.2E-19291334IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007520developmental stageroot development stage
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MNTQKIDVQK QKTGSVNCYS GKGSTFSRQP WKMELCFQPD QFPASEGGSS KQMINLGNTA  60
NMSTTIAGHF GSPAASAFYA TEVYMGFPEC DSYPVDSETL SYPSSNLDPA SSQSRDTQNI  120
PSCLEKSFGT PYRNSPVCDI LFIKSEVEDE HPYRILRENQ NQRIPYQLVE PSPRFQLRRQ  180
SANPSHSTYS VASGNSSSPA AAASNKSRIR WTHDLHKRFV ESVNRLGGAA KATPKGILRL  240
MGSEGLTIFQ IKSHLQKYRI ARHLPGSTEE KSEKGTCADF ITKFDPETGL RVAEALQLQL  300
EVQTRLHEQL EIQRNLQMQI EEQGKQLKKM LDSNRIQIRP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-20206263259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-20206263259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-20206263158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-20206263158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-20206263158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-20206263158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-20206263259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-20206263259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-20206263259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-20206263259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-20206263259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-20206263259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.177910.0cell culture| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4313180.0AM431318.2 Vitis vinifera contig VV78X241236.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268398.10.0PREDICTED: myb family transcription factor PHL5
TrEMBLA0A438IA620.0A0A438IA62_VITVI; Myb family transcription factor PHL5
TrEMBLD7TNV30.0D7TNV3_VITVI; Uncharacterized protein
STRINGVIT_13s0156g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.14e-55G2-like family protein