PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01001369001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 241aa    MW: 24800.1 Da    PI: 9.8137
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01001369001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22.1e-11207231126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+ C++fa+ G C +GdrC+FaHg
  GSVIVT01001369001 207 FKTKMCDNFAK-GSCTFGDRCHFAHG 231
                        69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423664IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-63762IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-73861IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.74E-16110186IPR004088K Homology domain, type 1
SMARTSM003221.5E-12115185IPR004087K Homology domain
PROSITE profilePS5008415.095116180IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.2E-17116184IPR004088K Homology domain, type 1
PfamPF000133.8E-12118182IPR004088K Homology domain, type 1
CDDcd001055.89E-15120180No hitNo description
SuperFamilySSF902291.96E-9205237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-17205238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.352206233IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6206232IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-8207231IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEVGGKRRGR PDGAAFGNGG FKKSKQETES FSTGIGSKSK PCTKFFSTSG CPFGEGCHFL  60
HYVPGGYSAV TQMTNLGGNP AMPPIARNPM APPTIPDGPP TAPPPGLAAA ASFGASATAK  120
ISVDASLAGA IIGKGGVNSK QICRLTGVKL SIKEHESDPN QRNIELEGTF DQIKQASAMV  180
RELIFNIGSA AGHAKNPTGS AASANNFKTK MCDNFAKGSC TFGDRCHFAH GANELRKPVA  240
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.138070.0inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4313180.0AM431318.2 Vitis vinifera contig VV78X241236.14, whole genome shotgun sequence.
GenBankFQ3940370.0FQ394037.1 Vitis vinifera clone SS0AFA22YO11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273052.11e-132PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R02e-96C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA5AP981e-131A5AP98_VITVI; Uncharacterized protein
STRINGVIT_13s0156g00320.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-89C3H family protein