PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01001332001
Common NameVIT_01s0011g00220
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 436aa    MW: 47467.5 Da    PI: 7.8966
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01001332001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.56.8e-34226282259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  GSVIVT01001332001 226 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPSCPVKKKVERSL-DGQVTEIIYKGQHNHQ 282
                        8****************************************.***************8 PP
2WRKY107.28e-34359417159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  GSVIVT01001332001 359 LDDGYRWRKYGQKVVKGNPYPRSYYKCTNPGCNVRKHVERAATDPKAVITTYEGKHNHD 417
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-30217284IPR003657WRKY domain
SuperFamilySSF1182902.35E-26223284IPR003657WRKY domain
SMARTSM007742.0E-37225283IPR003657WRKY domain
PROSITE profilePS5081124.352226284IPR003657WRKY domain
PfamPF031069.3E-26226282IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-37344419IPR003657WRKY domain
SuperFamilySSF1182908.37E-30351419IPR003657WRKY domain
PROSITE profilePS5081138.469354419IPR003657WRKY domain
SMARTSM007748.5E-40359418IPR003657WRKY domain
PfamPF031062.4E-26360417IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MTKNDETSLS SSASASRASA PLRPTITLPP RSSMETLFPG GPGFSPGPMT LVSNFFSDND  60
PDSDCRSFSQ LLAGAMASPA AFPGPRPSFS TDPQVSASSK EDRTSVDAAG DFEFRFKQNR  120
PSGLVIAQSP LFTVPPGLSP TCLLDSPGFF SQGPFVMSHQ QALAQVTAQA AQAHSHMQLQ  180
AKFPSSLSQM PPLVSDTRTA VKESSGLSQS DQRSQPSSFT VDKPADDGYN WRKYGQKQVK  240
GSEYPRSYYK CTHPSCPVKK KVERSLDGQV TEIIYKGQHN HQAPLPNKQS SQAIPEHLPG  300
SSDSEEMDDA ETRGDEKGED EPDPKRRNTE VRVSDQVSSH RTVTEPRIIV QTTSEVDLLD  360
DGYRWRKYGQ KVVKGNPYPR SYYKCTNPGC NVRKHVERAA TDPKAVITTY EGKHNHDVPA  420
AKSSSHNTAN SIASQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-44226420878Probable WRKY transcription factor 4
2lex_A3e-44226420878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5964660.0AY596466.2 Vitis vinifera DNA binding protein WRKY2 (WRKY2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268110.10.0DNA binding protein WRKY2
SwissprotQ9XI901e-167WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLF6HYH90.0F6HYH9_VITVI; Uncharacterized protein
STRINGVIT_01s0011g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-140WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]