PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01001308001
Common NameVIT_02s0154g00400
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 513aa    MW: 58135.4 Da    PI: 7.6776
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01001308001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS316.55.7e-971495112374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         ++L ++Ae v +g+++ aq +Larl+++ sp+g+p+qR+a+yf+eAL+  l+++ +  +   p ++ ++ +++ ++ a+k+fs+vsP+++f
  GSVIVT01001308001 149 LDQLCKAAELVGTGNFSIAQGILARLNHQLSPEGKPFQRAAFYFKEALQLILMNNNPAASP--PLRSPTPFDVIFKMGAYKVFSDVSPLIQF 238
                        679***************************************************6666654..555555567******************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvak 184
                        +++t+Nqa+lea++ ++r+HiiDfdi+ G+QW++++q+L  R++g+psl+iT+++sp+++ +  el+ ++e+L+ fA+e+g+ fe +v+  +
  GSVIVT01001308001 239 ANFTCNQALLEALDDADRIHIIDFDIGFGAQWASFMQELPVRNRGAPSLKITALASPSTThHPLELKLLRENLTLFADEIGIAFELQVVNFD 330
                        *********************************************************9998999*************************999 PP

               GRAS 185 rledlelee..LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        +++ +++++  +r++++Ea++Vn+ +   +   ++++l+     +L+++k+lsPk++v  ++ +d+++ ++ +++l+ ++ y+ l++sl+a+
  GSVIVT01001308001 331 SFDPVSYSMpyFRTSENEAIVVNFPIWSSSN--HPAALPL----LLRFIKQLSPKLMVSLDRGCDRGDLPLQQHLLHGIQSYTNLLESLDAT 416
                        ***9988873367777********9944443..4566655....*********************************************999 PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                          + +++ +k+Er+l++++i++    + ++      ++  W+  + +aGF+pv++s+++++qa+++++++ ++g++ve++++ l+l+W++r+
  GSVIVT01001308001 417 -NAMTDTVSKIERFLFQPRIESTTLGRLRS----PDKMPPWKTLFASAGFTPVSFSNFTESQADCVVKRTLVRGFHVEKRQALLILCWQNRE 503
                        .57779999************987776666....999******************************************************* PP

               GRAS 367 LvsvSaWr 374
                        L+s+SaWr
  GSVIVT01001308001 504 LISASAWR 511
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.636122491IPR005202Transcription factor GRAS
PfamPF035142.0E-94149511IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MIYQQQQQQQ QLETPEEKPQ IFNAQPAINH HQRSQNPNYF PVPPYTQQDQ HHLLQPPQAK  60
RHNPGGLDPN SQMPKVPFAD LGHEFLLRRQ QQQPLCFTNQ LQLLPQHQLQ QKPLMLSKQK  120
MVGGGEEMAP QSHHQQQQQQ QQQQQQALLD QLCKAAELVG TGNFSIAQGI LARLNHQLSP  180
EGKPFQRAAF YFKEALQLIL MNNNPAASPP LRSPTPFDVI FKMGAYKVFS DVSPLIQFAN  240
FTCNQALLEA LDDADRIHII DFDIGFGAQW ASFMQELPVR NRGAPSLKIT ALASPSTTHH  300
PLELKLLREN LTLFADEIGI AFELQVVNFD SFDPVSYSMP YFRTSENEAI VVNFPIWSSS  360
NHPAALPLLL RFIKQLSPKL MVSLDRGCDR GDLPLQQHLL HGIQSYTNLL ESLDATNAMT  420
DTVSKIERFL FQPRIESTTL GRLRSPDKMP PWKTLFASAG FTPVSFSNFT ESQADCVVKR  480
TLVRGFHVEK RQALLILCWQ NRELISASAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3216551120375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.80950.0bud| fruit| pedicel| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4261350.0AM426135.2 Vitis vinifera contig VV78X107228.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010662426.10.0PREDICTED: scarecrow-like protein 22 isoform X2
SwissprotO813161e-120SCL6_ARATH; Scarecrow-like protein 6
TrEMBLD7TN410.0D7TN41_VITVI; Uncharacterized protein
STRINGVIT_02s0154g00400.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-117GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]