PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01001286001 | ||||||||
Common Name | VIT_02s0154g00210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 106aa MW: 12209.5 Da PI: 10.0561 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 34.9 | 3.1e-11 | 26 | 46 | 3 | 23 |
-SS-EEEEEEE--TT-SS-EE CS WRKY 3 DgynWrKYGqKevkgsefprs 23 D ++WrKYGqK++kgs++pr GSVIVT01001286001 26 DDFSWRKYGQKPIKGSPHPRY 46 99*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 8.2E-7 | 3 | 22 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-10 | 12 | 47 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.702 | 19 | 56 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-9 | 22 | 47 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-5 | 24 | 76 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-7 | 26 | 46 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MCRKLRIKRS FKVPAISNKL ADIPPDDFSW RKYGQKPIKG SPHPRYFDVL PTFSSCYQDP 60 FRLAIHYFMV VSFHSPISKF IICGTLFCLL HLGSSIHIFL FLDLT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.1981 | 1e-174 | bud| fruit| inflorescence |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM425799 | 1e-171 | AM425799.2 Vitis vinifera contig VV78X253364.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002268403.3 | 1e-24 | PREDICTED: probable WRKY transcription factor 21 | ||||
Swissprot | Q9SR07 | 1e-21 | WRK39_ARATH; Probable WRKY transcription factor 39 | ||||
TrEMBL | D7TN24 | 3e-70 | D7TN24_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0154g00210.t01 | 4e-71 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.2 | 1e-24 | WRKY DNA-binding protein 39 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01001286001 |
Publications ? help Back to Top | |||
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